BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937311
Length=1084
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46180.1 | Symbols: UTR5, ATUTR5 | UDP-galactose transporter... 1790 0.0
AT5G59740.1 | Symbols: | UDP-N-acetylglucosamine (UAA) transpo... 1064 0.0
> AT3G46180.1 | Symbols: UTR5, ATUTR5 | UDP-galactose transporter
5 | chr3:16954365-16956833 REVERSE LENGTH=1383
Length=1383
Score = 1790 bits (969), Expect = 0.0
Identities = 1046/1084 (96%), Gaps = 1/1084 (0%)
Strand=Plus/Plus
Query 1 GGATCGTTAATGGAGAAGAAATGGCTGAGCCAGATTCTGTAAACGAAGCCAAGGAGAAGA 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 15 GGATCGTTAATGGAGAA-AAATGGCTGAGCCAGATTCTGTAAACGAAGCCAAGGAGAAGA 73
Query 61 AGAAGAAGCTATGGAAAGCTGTTTTCGCTATCTCTGGGATCATGATTACTCTCGTCATCT 120
|||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||
Sbjct 74 AGAAGAAGCTATGGAAAGCTGTTTTCGCAATCTCTGGGATCATGCTCACTCTCGTCATCT 133
Query 121 ACGGTCTTCTTCAGGAGAAGATTATGAGAGTGCCTTATGGATTGAAAAAAGAGTACTTTA 180
| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 134 ATGGTCTTCTTCAGGAAAAGATCATGAGAGTACCTTATGGATTGAAAAAAGAGTACTTTA 193
Query 181 AGCACTCTTTGTTTCTTGTTTTCTGTAATCGTCTTACTACATCAGCTGTTTCTGCTGCTG 240
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 194 AGCACTCTTTGTTTCTTGTTTTCTGTAATCGTCTCACTACATCAGCTGTTTCTGCTGCTG 253
Query 241 CTTTACTGGGAAGCAAGAAAGTTTTGGATCCTGTAGCTCCGGTTTATAAGTATTGTCTCA 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 254 CTTTACTGGCAAGCAAGAAAGTTTTGGATCCTGTAGCTCCGGTTTATAAGTATTGTCTTA 313
Query 301 TATCAGTAACTAACATCTTAACCACAACATGCCAATATGAGGCCCTCAAGTATGTGAGTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 TATCAGTAACTAACATCTTAACCACAACATGCCAATATGAGGCCCTCAAGTATGTGAGTT 373
Query 361 TCCCAGTCCAAACGTTGGCTAAATGTGCCAAAATGATACCTGTAATGGTTTGGGGAACTC 420
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 374 TCCCAGTCCAAACTTTGGCTAAATGTGCCAAGATGATACCTGTAATGGTTTGGGGAACTC 433
Query 421 TCATCATGCAGAAAAGGTATAGGGGGTTTGATTATTTAGTGGCGTTTCTCGTGACTCTTG 480
|||| |||||||||| ||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 434 TCATTATGCAGAAAAAGTATAGGGGATTTGATTATCTAGTGGCCTTTCTCGTGACTCTTG 493
Query 481 GCTGCTCTGTGTTTATTCTTTTTCCGGCGGGAGATGATATTAGTCCGTACAACAAGGGAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 GCTGCTCTGTGTTTATTCTTTTTCCGGCGGGAGATGATATTAGTCCGTACAACAAGGGAA 553
Query 541 GAGAAAATACTGTCTGGGGTGTATCCCTTATGGTTGGTTATCTTGGGTTTGATGGTTTTA 600
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 GAGAAAATACTGTGTGGGGTGTATCCCTTATGGTTGGTTATCTTGGGTTTGATGGTTTTA 613
Query 601 CAAGCACATTCCAAGACAAACTCTTTAAAGGTTATAATATGGAAATACATAACCAGATAT 660
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 614 CAAGCACATTCCAAGACAAACTTTTTAAAGGTTATAATATGGAAATACATAACCAGATAT 673
Query 661 TCTACACAACAATTTGTTCCTCTATTCTTAGTTTTACTGGCCTTATATTGCAAGGACATT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 TCTACACAACAATTTGTTCCTCTATTCTTAGTTTTACTGGCCTTATATTGCAAGGACATT 733
Query 721 TACTCCCAGCAGTAGACTTTGTTTCTCGACATAGGGATTGTCTATTTGACATCGCTTTGC 780
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 734 TACTCCCAGCAGTAGACTTTGTTTCTCGACATAGGGATTGCCTATTTGACATAGCTTTGC 793
Query 781 TTTCCACTGTAGCAACAGCCAGCCAATTTTTCATTTCGTACACCATTAGGACATTTGGTG 840
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 794 TTTCCACTGTAGCAACAGCCAGCCAATTTTTCATTTCCTACACCATTAGGACATTTGGTG 853
Query 841 CTCTAACGTTTGCTGCCATTATGACAACAAGACAGCTTGTGAGCATTATGCTCTCCTGCA 900
||||||||||||||||||| ||||| ||||| ||||||| ||||| |||||||||||||
Sbjct 854 CTCTAACGTTTGCTGCCATAATGACTACAAGGCAGCTTGCCAGCATCATGCTCTCCTGCA 913
Query 901 TTTGGTTCTCTCACCCGCTTAGCTGGGAGCAGTGTATTGGATCCGTAATTGTTTTCGGGT 960
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 914 TTTGGTTCTCACACCCGCTTAGCTGGGAGCAGTGTATTGGATCCGTAATTGTTTTCGGAT 973
Query 961 CTCTATATGCTAAAACCTTAGTGAAGAAGAGATCAGAAAATCCGCAGGCAGCTCAAGAAC 1020
||||||||||||||||||| |||||||||| ||||||||| |||| ||||||||||||||
Sbjct 974 CTCTATATGCTAAAACCTTCGTGAAGAAGAAATCAGAAAAGCCGCCGGCAGCTCAAGAAC 1033
Query 1021 TTCCACCGGATGAAGAGGCTCAGCCTCTGAAGGGAAACCCTTAAAGCACAGAGAGAGCCT 1080
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1034 TTCCACGGGATGAAGAGGCGCAGCCTCTGAAGGGAAACCCTTAAAGCACAGAGAGAGCTT 1093
Query 1081 TATC 1084
||||
Sbjct 1094 TATC 1097
> AT5G59740.1 | Symbols: | UDP-N-acetylglucosamine (UAA) transporter
family | chr5:24070051-24073055 REVERSE LENGTH=1495
Length=1495
Score = 1064 bits (576), Expect = 0.0
Identities = 845/974 (87%), Gaps = 21/974 (2%)
Strand=Plus/Plus
Query 21 ATGGCTGAGCCAG-ATTCTGTAAACGAAGCCAAG-GAGAAGAAGAAGAAGCTATGGAAAG 78
||||||||||||| ||| ||||||| || || || ||| |||| || |||||||||
Sbjct 202 ATGGCTGAGCCAGAATT-AGTAAACGGAG--GAGTGA-AAG-AGAACAAATTATGGAAAG 256
Query 79 CTGTTTTCGCTA-TCTCTGGGATCATGAT-TACTCTCGTCATCTACGGTCTTCTTCAGGA 136
||| ||||| | | || || || ||| | |||||| || ||||||||| ||||||||||
Sbjct 257 GTGTATTCGC-AGTTTCCGGCATTATG-TCTACTCTTGTAATCTACGGTGTTCTTCAGGA 314
Query 137 GAAGATTATGAGAGTGCCTTATGGATTGAAAAAAGAGTACTTTAAGCACTCTTTGTTTCT 196
|||||| |||||||| ||||||||| |||| || |||| ||||||||||||||||||||
Sbjct 315 GAAGATAATGAGAGTTCCTTATGGAGTGAACAAGGAGTTTTTTAAGCACTCTTTGTTTCT 374
Query 197 TGTTTTCTGTAATCGTCTTACTACATCAGCTGTTTCTGCTGCTGCTTTACTGGGAAGCAA 256
||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||| ||||||
Sbjct 375 TGTTTTCTGCAATCGGCTTACTACATCAGCTGTCTCTGCTGGTGCTTTACTGGCAAGCAA 434
Query 257 GAAAGTTTTGGATCCTGTAGCTCCGGTTTATAAGTATTGTCTCATATCAGTAACTAACAT 316
||||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||
Sbjct 435 GAAAGTTTTGGATCCTGTAGCTCCGGTTTATAAATATTGCCTTATATCAGTGACTAACAT 494
Query 317 CTTAACCACAACATGCCAATATGAGGCCCTCAAGTATGTGAGTTTCCCAGTCCAAACG-T 375
|||||| |||||||| ||||||||||| |||||||||||||| ||||| |||||||| |
Sbjct 495 CTTAACTACAACATGTCAATATGAGGCTCTCAAGTATGTGAGCTTCCCTGTCCAAACTCT 554
Query 376 TGGCTAAA-TGTGCCAAAATGATACCTGTAATGGTTTGGGGAACTCTCATCATGCAGAA- 433
|| | ||| ||||||||||||||||| |||||||| |||||||| ||||| ||||||||
Sbjct 555 TG-C-AAAGTGTGCCAAAATGATACCAGTAATGGTGTGGGGAACGCTCATTATGCAGAAG 612
Query 434 AAGGTATAGGGGGTTTGATTATTTAGTGGCGTTTCTCGTGACTCTTGGCTGCTCTGTGTT 493
||| |||| ||| ||||| ||||||||||| ||||| ||||| |||||||||||||| ||
Sbjct 613 AAG-TATAAGGGCTTTGACTATTTAGTGGCTTTTCTGGTGACCCTTGGCTGCTCTGTCTT 671
Query 494 TATTCTTTTTCCGGCGGGAGATGATATTAGTCCGTACAACAAGGGAAGAGAAAATACTGT 553
|||||| |||||||| ||||||||| ||||||| ||||| |||||||| |||||||||||
Sbjct 672 TATTCTCTTTCCGGCAGGAGATGATGTTAGTCCATACAATAAGGGAAGGGAAAATACTGT 731
Query 554 CTGGGGTGTATCCCTTATGGTTGGTTATCTTGGGTTTGATGGTTTTACAAGCACATTCCA 613
|||||||| |||||||||| |||||||||||||||||| || |||||||| ||||||||
Sbjct 732 TTGGGGTGTTTCCCTTATGGCTGGTTATCTTGGGTTTGACGGCTTTACAAGTACATTCCA 791
Query 614 AGACAAACTCTTTAAAGGTTATAATATGGAAATACATAACCAGATATTCTACACAACAAT 673
|||||| ||||||||||| ||||| ||||| ||||||||||| ||||||||||||||| |
Sbjct 792 AGACAAGCTCTTTAAAGGATATAACATGGAGATACATAACCAAATATTCTACACAACACT 851
Query 674 TTGTTCCTCTATTCTT-AGTTTTACTGGCCTTATATTGCAAGGACATTTACTCCCAGCAG 732
|||||| | | || || ||||| ||||| |||||||||||||| ||| |||| ||||| |
Sbjct 852 TTGTTCTTGTGTT-TTGAGTTTCACTGGACTTATATTGCAAGGGCATCTACTACCAGCTG 910
Query 733 TAGACTTTGTTTCTC-GACATAGGGATTGTCTATTTGACATCGCTTTGCTTTCCACTGTA 791
|||| |||||||||| | |||||||||||| || | ||||||||| |||||||||| ||
Sbjct 911 TAGATTTTGTTTCTCTG-CATAGGGATTGTTTACTCGACATCGCTCTGCTTTCCACAGTT 969
Query 792 GCAACAGCCAGCCAATTTTTCATTTCGTACACCATTAGGACATTTGGTGCTCTAACGTTT 851
|||||||| ||||| || |||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 970 GCAACAGCGAGCCAGTTCTTCATTTCTTACACAATTAGGACATTTGGTGCTCTAACATTT 1029
Query 852 GCTGCCATTATGACAACAAGACAGCTTGTGAGCATTATGCTCTCCTGCATTTGGTTCTCT 911
||||| || ||||| || |||||||||| ||||| |||||||| ||||||||||| |||
Sbjct 1030 GCTGCAATCATGACGACCAGACAGCTTGCAAGCATCATGCTCTCATGCATTTGGTTTTCT 1089
Query 912 CACCCGCTTAGCTGGGAGCAGTGTATTGGATCCGTAATTGTTTTCGGGTCTCTATATGCT 971
|| || |||||||||||||| ||||| ||||| || || |||||||||||| |||||||
Sbjct 1090 CATCCTCTTAGCTGGGAGCAATGTATCGGATCGGTCATCGTTTTCGGGTCTTTATATGCG 1149
Query 972 AAAACCTTAGTGAA 985
|||| |||| ||||
Sbjct 1150 AAAAACTTACTGAA 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53112176610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5