BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937312

Length=371
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G46190.1 | Symbols:  | TRAF-like family protein | chr3:16965...   363    9e-100


> AT3G46190.1 | Symbols:  | TRAF-like family protein | chr3:16965889-16967345 
FORWARD LENGTH=876
Length=876

 Score =  363 bits (196),  Expect = 9e-100
 Identities = 236/255 (93%), Gaps = 4/255 (2%)
 Strand=Plus/Plus

Query  1    CGTTCGAGTCTTTTGGGAAAATGATGGAGCTAGTCAACAATGGATATTACGAGTCCCTTC  60
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  113  CGTTCGAGTCTTTTGGGAAAATGATGGAGCTAGTAAACAATGGATATTACGAGTCCCTTC  172

Query  61   CTTTCACTGTCGATGGATTCAATTGGACGTTCAAAATCTACCCAAACGGAAACACCGATA  120
            ||||||||||||||||| |||| |||||||||||||||||||| ||||||||| | || |
Sbjct  173  CTTTCACTGTCGATGGAATCAACTGGACGTTCAAAATCTACCCTAACGGAAACTCGGACA  232

Query  121  CCACAAGAGGACTTGTTTAT-TGTTATGTAAGAATTGATAACTCAAGTATCACCGACCCA  179
            |||||||||||||| ||||| | |||||||| ||||||| ||||||| ||||||||||||
Sbjct  233  CCACAAGAGGACTTATTTATCT-TTATGTAAAAATTGATGACTCAAGCATCACCGACCCA  291

Query  180  TCATTAGATGTGTATGCGGCGATCAAGTTCTTTGTCTACAACAATGGCATTAGCGAGTAT  239
             |||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||
Sbjct  292  CCATTAGATGTGTATGCGGAGATCAAGTTCTTCGTCTACAACTATGGCATTAGCGAGTAT  351

Query  240  TATATACATACCAAG  254
            ||||  |||||||||
Sbjct  352  TATA--CATACCAAG  364



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17442908903


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5