BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937315
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46190.1 | Symbols: | TRAF-like family protein | chr3:16965... 1194 0.0
> AT3G46190.1 | Symbols: | TRAF-like family protein | chr3:16965889-16967345
FORWARD LENGTH=876
Length=876
Score = 1194 bits (646), Expect = 0.0
Identities = 819/896 (91%), Gaps = 37/896 (4%)
Strand=Plus/Plus
Query 21 ATGTCTAACTACGAATTAAAAATAACTTCTAAAGGATGTCAACAACACGAGAAGCTCCAA 80
|||||||| |||||||||||| ||||||||||||| | ||| ||||||||||||| |||
Sbjct 1 ATGTCTAAATACGAATTAAAAGTAACTTCTAAAGGGTCACAAAAACACGAGAAGCT-CAA 59
Query 81 TTA-C-CT-TTACCACTCATTTTTATGAGAGAACGTCCTCCAACAACTTACAGCGTCACG 137
| | || || | || || | || ||||||||||||||||||||||||||||||||||
Sbjct 60 -GACCGCTCTT-CTAC-CA-TATT-GGAGAGAACGTCCTCCAACAACTTACAGCGTCACG 114
Query 138 TTCGAGTCTTTTGGGAAAATGATGGAGCTAGTCAACAATGGATATTACGAGTCCCTTCCT 197
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 115 TTCGAGTCTTTTGGGAAAATGATGGAGCTAGTAAACAATGGATATTACGAGTCCCTTCCT 174
Query 198 TTCACTGTTGATGGATTCAATTGGACGTTCAAAATCTACCCAAACGGAAACTCGGACACT 257
|||||||| |||||| |||| |||||||||||||||||||| |||||||||||||||||
Sbjct 175 TTCACTGTCGATGGAATCAACTGGACGTTCAAAATCTACCCTAACGGAAACTCGGACACC 234
Query 258 ACAAGAGGACTTGTCTAT-TGTTATGTAAGAATTGATAACTCAAGCCTCACCGACCCACC 316
|||||||||||| | ||| | |||||||| ||||||| |||||||| |||||||||||||
Sbjct 235 ACAAGAGGACTTATTTATCT-TTATGTAAAAATTGATGACTCAAGCATCACCGACCCACC 293
Query 317 ATTAGATGTGTATGCGGAGATCAAGTTCTTCG-CATACAACTATGGCCTTAGCCAGTATT 375
|||||||||||||||||||||||||||||||| | |||||||||||| ||||| ||||||
Sbjct 294 ATTAGATGTGTATGCGGAGATCAAGTTCTTCGTC-TACAACTATGGCATTAGCGAGTATT 352
Query 376 ATACATACCAAGAAGTCGAGCCGGTAAAGTTTGATAGTGTAGAACAGGAGTGGGGAAAGT 435
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 353 ATACATACCAAGAAGTCGAGCCGGTAAAGTTTGATAGTGTACAACAGGAGTGGGGAAGGT 412
Query 436 GGATTGTTCTAACTACGATGTCTTCGTTGCTCAACGCAACAAATCAGAAGTTTTCTCCTA 495
|||||| | | | | |||||||||||||||||||||||||||||||||||||||
Sbjct 413 GGATTG----A--T--G-T--CTTCGTTGCTCAACGCAACAAATCAGAAGTTTTCTCCTA 461
Query 496 CGATGAAAACATCAGCAGCCCCGTTTTCACTTGGAACCTCACCAATTTCTCTACACTCAC 555
||||||||||| |||| ||| ||||||||||||| |||| ||||||||||||| |||||
Sbjct 462 TGATGAAAACATAAGCAACCCTGTTTTCACTTGGAGCCTCCCCAATTTCTCTACCCTCAC 521
Query 556 TCTGGACTCTTACACATCCGACCCGTTTTCTTCTGGAGACAGGAACTG--TTT--A---T 608
||| |||||||||||||||||||||||||||||||||||||| ||||| ||| | |
Sbjct 522 TCTCGACTCTTACACATCCGACCCGTTTTCTTCTGGAGACAGAAACTGGGTTTTGAAAGT 581
Query 609 ----CCAAATGGAGATGGTGTTGGAACGGATAATTCTTTGTCACTCTACTTGTTGAGTGA 664
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 582 ATATCCAAATGGAGATGGTGTTGGAAAGGATAATTCTTTGTCACTCTACTTGTTGAGTGA 641
Query 665 GTCTAATGAAAAGAATTACGTTCGAGCCACACTAAGAGTTCTAAACCAAATCGGATCCGA 724
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 642 GTCTAATGAAAAGAATTACGTTCGAGCCACACTACGAGTTCTAAACCAAATCGGATCCGA 701
Query 725 TAATGTGGAGAAGCCAGTTGAGGGATGGCCTAATGCAGCAGAAAATGGATGGGGTTACGC 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 702 CAATGTGGAGAAGCCAGTTGAGGGATGGCCTAATGCAGCAGAAAATGGATGGGGTTAC-C 760
Query 785 -GGAGTTTATACCTCTTGCAGATCTTCAAGATTCAACCAAAGGTTTTGTTGTGGACGATG 843
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 761 AGGAGTTTATACCTCTCGCAGATCTTCAAGATGCAACCAAAGGTTTTGTTGTGGACGATT 820
Query 844 TGCTTGAAGTTGAAGTTGAGATCATGGCCATCTCTAAACAAACTCCAATTAATTAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 TGCTTGAAGTTGAAGTTGAGATCATGGCCATCTCTAAACAAACTCCAATTAATTAG 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44909327418
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5