BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937320
Length=1211
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15935.1 | Symbols: | pseudogene, hypothetical protein | ch... 263 3e-69
AT3G13624.1 | Symbols: | pseudogene, hypothetical protein | ch... 187 2e-46
AT4G09790.1 | Symbols: | pseudogene of the F-box family protei... 134 3e-30
AT3G23685.1 | Symbols: | F-box associated ubiquitination effec... 76.8 4e-13
AT3G22421.1 | Symbols: | F-box and associated interaction doma... 73.1 6e-12
AT3G23680.1 | Symbols: | F-box associated ubiquitination effec... 71.3 2e-11
AT5G41500.1 | Symbols: | F-box and associated interaction doma... 65.8 1e-09
> AT3G15935.1 | Symbols: | pseudogene, hypothetical protein |
chr3:5390599-5391763 REVERSE LENGTH=1165
Length=1165
Score = 263 bits (142), Expect = 3e-69
Identities = 384/493 (78%), Gaps = 47/493 (10%)
Strand=Plus/Plus
Query 6 TTGAAAGTTTGAAAG---AATGACGACAATATCAGATCTGTC-CGAGGAATTGGTAGAG- 60
||||||| | ||||| ||||||||| || || ||| | || | ||||||| | |
Sbjct 1 TTGAAAGCTCGAAAGAATAATGACGACGATTTCCGATTTTTCAC-CTTAATTGGTCG-GC 58
Query 61 GAGATACTCT-GTAGGGTTCCAGCA--ACATCTCTGAAAGCTTTACGATCTACTTGCAAA 117
|||||||| | | |||||||| | | |||||| ||||||| | || | ||||||||||
Sbjct 59 GAGATACTGTCG-AGGGTTCC-G-ATGACATCTTTGAAAGCAGTGCGGTGTACTTGCAAA 115
Query 118 AAGTGGAACGCTTTATCGAAAAATCA-GATT-TTTG-GTAAAACAGAGAAACAGTTTTTG 174
|||||||||| |||||||||| || | |||| |||| | | | || ||| ||||| |
Sbjct 116 AAGTGGAACGTTTTATCGAAAGAT-AGGATTATTTGCGCAGCA-AG-GAAGGAGTTTCTA 172
Query 175 GGATTCATGATGATGGATTATAGAGTTTGTTCAG-TGAAATTCAATCTCCCAA---A--C 228
||||||||||||||||||| |||||| |||| | |||||||| |||| |||| | |
Sbjct 173 GGATTCATGATGATGGATTCTAGAGTCTGTT-GGATGAAATTCGATCT-CCAAGGGATCC 230
Query 229 G-AA-GACTA-C--GG-CG-CAGACCCATCTATAAAGCAGGTAGCTTTACTTGATCAAG- 280
| || || | | || || | | || | ||||| ||| || | | |||||||| ||
Sbjct 231 GCAACAAC-ACCTTGGTCGATATATCCTTGTATAAGGCAAGTTGGTCAACTTGATC-AGA 288
Query 281 TGAAGATATGTAAACTCTTTCACTGCGACGGCTTGTTGTTATGCGTCGTGAAGGACAACA 340
|| || ||| ||||||| |||||||||||||||||||||||||||| |||||||| |||
Sbjct 289 TGGAGGTATCTAAACTC-TTCACTGCGACGGCTTGTTGTTATGCGTGGTGAAGGATAACT 347
Query 341 C-AGGGCT-TGTGGTATGGAA-CCCGTATTTGGGTCAAACCA-AGTGGATCCAACCCAGA 396
| | | || | |||| ||||| ||| ||||| ||||||||| | |||||||||| |||
Sbjct 348 CGATG-CTCT-TGGTGTGGAATCCC-TATTTAGGTCAAACCGTAC-GGATCCAACCGAGA 403
Query 397 ACCAGTTTCCTCAGCTCAGACAGGTATGCTCTTGGTTATGACAAGAACCGTAACCACAAG 456
| |||||||| ||| | ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 404 AACAGTTTCCACAGATTAGACAGGTATGCTCTTGGTTACGACAAGAACCGTAACCACAAG 463
Query 457 ATTTTGAGGATTT 469
|| ||||| |||
Sbjct 464 ATCCTGAGG-TTT 475
> AT3G13624.1 | Symbols: | pseudogene, hypothetical protein |
chr3:4454219-4456010 REVERSE LENGTH=1792
Length=1792
Score = 187 bits (101), Expect = 2e-46
Identities = 523/714 (73%), Gaps = 80/714 (11%)
Strand=Plus/Plus
Query 502 TCTGATTTATGGAAGTTTTATTG-TGTCACTCCCGATTGGGAGATACCGTCTCATCAACG 560
||| ||| ||| ||| || ||| | ||||| |||| ||| | ||| |||| || ||||
Sbjct 1130 TCTAATTCATGAAAGAGTT-TTGATCTCACTTCCGACTGGTATATAGGGTCTAATAAACG 1188
Query 561 TGGTGTGTCTTTGAAGGGAGATAGC-TATTTTTTGGGTCATGAGAAGATAACAGTGAGTG 619
||| |||||||| |||||| ||| | || | |||| ||| | ||| || | | |||||
Sbjct 1189 TGGCGTGTCTTTCAAGGGAAATA-CATACATCTTGGCTCAAGGGAAAAT-A-A--GAGTG 1243
Query 620 GAGGAGAAGGGGTGAGGAGAAAGATTGAAGATAGTTTACTCT-GTTTTGATTTTACAAGT 678
|| || | || | | |||||||| | || |||||||| | ||||||||||||| |
Sbjct 1244 GA-TAGTA-----GATG-G-AAGATTGAGGCTATTTTACTCTCG-TTTGATTTTACAACT 1294
Query 679 GAGAGATTTGGACCGCCCCTGCCTCTGCCTCTTTCGTTTCACTCTTATCGTTCAGAA-AC 737
||||||||||||||| | | | ||| ||| ||||| || |||| | || || |
Sbjct 1295 GAGAGATTTGGACCG---C-G-GT-TGCAGCTTCCGTTTGGCTTTTATTATCCACAAGA- 1347
Query 738 TATG-ACTC--TGTCTTGTGTTGGAGAGGAGCAGCTCGCCGTGT-TTA-GTTACCACCTG 792
| || ||| | |||||||| |||| |||||||||| | || ||| | | | |||
Sbjct 1348 TTTGTTCTCTTTATCTTGTGTCAGAGAAGAGCAGCTCG-TG-GTATTACATCA-AAGCTG 1404
Query 793 AAT--TTATCTAGCGTATA-T-GAGATTTGGGTTACGAATAAGCTTGAACCCAATGCGGT 848
|| || ||| ||| | | | ||||||||| ||||||||||| |||| ||| || ||
Sbjct 1405 GATGGTT-TCTGGCG-A-ACTGGAGATTTGGATTACGAATAAGATTGATCCCGGTGTTGT 1461
Query 849 GTCCTGGAGCAAGTTTTTGAGATCGTTC-CGTGGTTCTC-ATGTTCA-CATTGAGGCTGG 905
|| |||| ||||||||||||||| || | | ||| || | || | || | |||||
Sbjct 1462 CTCGTGGACCAAGTTTTTGAGATCCATCTC-TTGTTGTCGA-ATT-AGTATCCAAGCTGG 1518
Query 906 GAGTTTTTTCATTGACGAAGG-GAAGAAAGTTGCTGTGGTTTTTGGTC-T-A-GATTACA 961
|||||| |||||| ||| ||| ||| |||| ||||||||||| | || | | || || |
Sbjct 1519 GAGTTTCTTCATTAACG-AGGAGAATCAAGTGGCTGTGGTTTTCGATCTTGACGAATATA 1577
Query 962 AATATGA-TGAGAC---TCGTTACCAAACAGCTCACATCATTGGACAAGGTGGATACTTC 1017
|| || |||||| ||| ||||||||||| |||| || ||||||| || |||||||
Sbjct 1578 AA-GGGAGTGAGACATGTCGCAACCAAACAGCTTACATTATCGGACAAGATGAATACTTC 1636
Query 1018 AAATCTGTGAATATCGGAGAAGCTCCGAATCTCGCAAAACTTGACAAACCATACATGTTT 1077
|||||||||||||| || || ||||||||||||| || || ||| || || | |
Sbjct 1637 AAATCTGTGAATATTGGGGAGGCTCCGAATCTCGGAAGACCTGA-GAA--AT--A----T 1687
Query 1078 GGATATACTCCGAGA-A-AGTATTGTTACCCAGTTGTGTGCTCTTCTTATGTTCCAAGCT 1135
| |||| | | | | |||||| |||| |||||||||||||||||||||||||||
Sbjct 1688 -G-----CTCC-ACACATA-TATTGTCGCCCACTTGTGTGCTCTTCTTATGTTCCAAGCT 1739
Query 1136 TAGTACAACTGCAAATCAACCAACCGGGA-A-AAGGGAAAGAACGTGATTATTA 1187
|||| | || |||||||||||||| | | | |||| |||||| | ||| ||||
Sbjct 1740 TAGTGCCGCTCCAAATCAACCAACCAG-ACACAAGG-AAAGAAAGCGATGATTA 1791
> AT4G09790.1 | Symbols: | pseudogene of the F-box family protein
| chr4:6163414-6164655 REVERSE LENGTH=1242
Length=1242
Score = 134 bits (72), Expect = 3e-30
Identities = 295/397 (74%), Gaps = 38/397 (10%)
Strand=Plus/Plus
Query 482 ACGAAATCTATGATCTT--AGCTCTGATTTATGGAAGTTTTATTG-TGTCACTCCCGATT 538
||||||| | |||| || || ||| || |||| || || ||| || |||||| || |
Sbjct 543 ACGAAATTTTTGAT-TTGAAG-TCTAATGCATGG-AGGGTTCTTGATGCCACTCCTGACT 599
Query 539 GGGAGATACCGTCTCATCAACGTGGTGTGTCTTTGAAGGGAGATAGC-TA-TTTTTTGGG 596
|||||||| ||| |||||||||| ||||||||||| ||| ||| | || |||||| |
Sbjct 600 GGGAGATAGATTCTTATCAACGTGGCGTGTCTTTGAAAGGAAATA-CTTACTTTTTT-GC 657
Query 597 TCATGAGAAGATAACAGTGAGTGG-AGGAGAAG-GGGTG-AG-GA--GAAAGA-TT-GAA 648
| | || ||| || |||| |||| ||| || | | || || || | |||| || ||
Sbjct 658 T-A-AAG-AGAAAATAGTG-GTGGAAGGGGATGATGTTGTAGTGATTG-AAGATTTCAAA 712
Query 649 GATAGTTT-ACTCTGTTTTGATTTTACAAGTGAGAGATTTGGACC-GCCCCTGCCTCTGC 706
||| ||| | ||||||||||||||||||||||||||||| | | || | |||||
Sbjct 713 GATTTTTTGA-TCTGTTTTGATTTTACAAGTGAGAGATTTA-ATTTGGACCA-CGTCTGC 769
Query 707 CTCTTTCGTTTCACTCTTATCGTTC-AGAAACTATGACTCTGTCTTGTGTTGGAGAGGAG 765
|||| ||||||||||||| | | ||| || ||||||| ||| ||||| |||| |||
Sbjct 770 CTCTACCGTTTCACTCTTA-CAATGGAGAGACCGTGACTCTTTCTAGTGTTAGAGAAGAG 828
Query 766 CAGCTCGCCGTGTTTAGTTACCACCTGAATTTATCTAGCGTATATG-AGATTTGGGTTAC 824
||||| || ||||| | | | || | | || | || | | ||| |||| ||||||||
Sbjct 829 CAGCTAGCAGTGTT-A-T-ATCAGCAGGAT--A-CTTGTTTG-ATGGAGATATGGGTTAC 881
Query 825 GAATAAGCTTGAACCCAATGCGGTGTCCTGGAGCAAG 861
||||||| ||||||| ||| |||||| |||||||||
Sbjct 882 GAATAAGATTGAACCGGATGTGGTGTCATGGAGCAAG 918
> AT3G23685.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8527239-8528317 FORWARD LENGTH=993
Length=993
Score = 76.8 bits (41), Expect = 4e-13
Identities = 49/53 (92%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 655 TTACTCTGTTTTGATTTTACAAGTGAGAGATTTGGACCGCCCCTGCCTCTGCC 707
||| ||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 556 TTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCC 608
> AT3G22421.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7949116-7950396 REVERSE LENGTH=1281
Length=1281
Score = 73.1 bits (39), Expect = 6e-12
Identities = 100/128 (78%), Gaps = 9/128 (7%)
Strand=Plus/Plus
Query 659 TCTGTTTTGATTTTACAAGTGAGAGATTTGGACCGCCCCTGCCTCTGCCTCTTTCGTTTC 718
||||||||||||||||||||||||||||||| |||| ||||| |||| ||| |||
Sbjct 719 TCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTATGCCTTTGCCG-TTT-GTTAG 776
Query 719 ACTCTTATCGTTCAGAAAC-TA-TGACTCTGTCTTGTGTTGGAGAGGAGCAGCTCGCCGT 776
| | | | ||| | ||| | | ||||||| ||||||||| |||| ||| |||| || ||
Sbjct 777 A-TAT-A-CGTCCGGAAGCCTTGTGACTCTATCTTGTGTTAGAGAAGAGAAGCTTGCGGT 833
Query 777 GTTTAGTT 784
||| |||
Sbjct 834 -TTT-GTT 839
> AT3G23680.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8526366-8527173 REVERSE LENGTH=708
Length=708
Score = 71.3 bits (38), Expect = 2e-11
Identities = 48/53 (91%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 655 TTACTCTGTTTTGATTTTACAAGTGAGAGATTTGGACCGCCCCTGCCTCTGCC 707
||| ||||||||||||||||||||||||||||||| || | |||||||||||
Sbjct 172 TTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCTCTTCTGCCTCTGCC 224
> AT5G41500.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:16604002-16605213 FORWARD LENGTH=1212
Length=1212
Score = 65.8 bits (35), Expect = 1e-09
Identities = 45/50 (90%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 659 TCTGTTTTGATTTTACAAGTGAGAGATTTGGACCGCCCCTGCCTCTGCCT 708
||||||||||||||||||||||||||||||| |||| || ||||| |||
Sbjct 692 TCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTACCTCTACCT 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59487645825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5