BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937331
Length=514
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46230.1 | Symbols: ATHSP17.4, HSP17.4 | heat shock protein ... 601 2e-171
AT1G53540.1 | Symbols: | HSP20-like chaperones superfamily pro... 544 4e-154
> AT3G46230.1 | Symbols: ATHSP17.4, HSP17.4 | heat shock protein
17.4 | chr3:16984118-16984841 REVERSE LENGTH=724
Length=724
Score = 601 bits (325), Expect = 2e-171
Identities = 440/494 (89%), Gaps = 13/494 (3%)
Strand=Plus/Plus
Query 11 AAGTGAAGCAATGTCTCTGA-TTCCGAGCATTTTTGGAGGTCGAAGGACCAACGTGTTCG 69
||| ||| | |||||||| | |||||||| |||||||||| ||||| || ||||||||||
Sbjct 99 AAGCGAAACGATGTCTCT-AGTTCCGAGCTTTTTTGGAGGCCGAAGAACAAACGTGTTCG 157
Query 70 ATCCATTGTCACTCGACGTATGGGATCCTTTTGAGGGATTCTTGACGTCATCAGGTGTTG 129
| ||||| ||||| |||||||||||||| || || |||||||||||| | | || ||||
Sbjct 158 ACCCATTTTCACTAGACGTATGGGATCCGTTCGAAGGATTCTTGACG-C--CCGG-GTTG 213
Query 130 -CAAACGCACCGGCTAAGGACGTGGCAGCGTTCACAAACGCTAAAGTGGATTGGAGGGAG 188
|||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 214 ACAAACGCACCTGCCAAGGACGTGGCAGCGTTCACAAACGCTAAAGTGGACTGGAGGGAG 273
Query 189 ACACCTGAGGCGCACGTGTTCAAGGCGGACTTGCC-GGGGTTGAAGAAGGAAGAGGTGAA 247
|||||||| ||||| ||||||||||||||| |||| ||| || |||||||||||||||||
Sbjct 274 ACACCTGAAGCGCATGTGTTCAAGGCGGACGTGCCTGGGCTT-AAGAAGGAAGAGGTGAA 332
Query 248 GGTGGAGGTTGAAGATGGCAATATACTTCAGATAAGCGGAGAGAGGAGTAGTGAGAGTGA 307
|||||||||||||||||| || ||||||||||||||||| |||||||| ||||||| |||
Sbjct 333 GGTGGAGGTTGAAGATGGTAACATACTTCAGATAAGCGGTGAGAGGAGCAGTGAGAATGA 392
Query 308 AGAGAAGAGTGACA-AGTGGCACCGTGTGGAGAGGTCAAGTGGGAAGTTCATGAGGAGGT 366
|||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 393 AGAGAAGAGTGACACA-TGGCACCGTGTGGAGCGGTCAAGTGGGAAGTTCATGAGGAGGT 451
Query 367 TTAGGTTGCCGGAGAATGCGAAGATGGAAGAAGTGAAGGCGAGTATGGAGAATGGTGTGT 426
|| ||||||| |||||||| ||| |||| ||||| |||||||||||||||||||| ||||
Sbjct 452 TTCGGTTGCCAGAGAATGCAAAGGTGGAGGAAGTAAAGGCGAGTATGGAGAATGGGGTGT 511
Query 427 TGTCGGTTACGGTGCCGAAAGTGCCGGAGAAG-AAGCCTGAGGTCAAGTCCATAGATATC 485
|||||||||||||||||||||| | ||||| | ||||| |||||||||||| | ||||||
Sbjct 512 TGTCGGTTACGGTGCCGAAAGTTCAGGAGA-GTAAGCCGGAGGTCAAGTCCGTTGATATC 570
Query 486 TCCGGTTAACAGGA 499
|| |||||| ||||
Sbjct 571 TCTGGTTAAGAGGA 584
> AT1G53540.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr1:19980462-19981109 FORWARD LENGTH=648
Length=648
Score = 544 bits (294), Expect = 4e-154
Identities = 431/498 (87%), Gaps = 5/498 (1%)
Strand=Plus/Plus
Query 10 GAAGTGAAGCAATGTCTCTGATTCCGAGCATTTTTGGAGGTCGAAGGACCAACGTGTTCG 69
|||||||| | |||||||| ||||| ||||| || ||||| |||| || ||||| ||||
Sbjct 38 GAAGTGAAACGATGTCTCTAATTCCAAGCATCTTCGGAGGAAGAAGAACAAACGTTTTCG 97
Query 70 ATCCATTGTCACTCGACGTATGGGATCCTTTTGAGGGATTCTTGACGTCATCAGGTGTT- 128
|||| || || || || || | ||||| || || || ||||||||| | ||||| ||
Sbjct 98 ATCCGTTCTCGCTGGATGTTTTCGATCCGTTCGAAGGTTTCTTGACGCCGTCAGG-ATTG 156
Query 129 GCAAACGCACCGGCTAAGGACGTGGCAGCGTTCACAAACGCTAAAGTGGATTGGAGGGAG 188
||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 157 GCAAACGCACCCGCTATGGATGTGGCAGCGTTCACAAACGCTAAAGTGGATTGGAGGGAG 216
Query 189 ACACCTGAGGCGCACGTGTTCAAGGCGGACTTGCCGGGGTTGAAGAAGGAAGAGGTGAAG 248
||||||||||||||||||||||||||||| || ||||| ||| |||||||||||||||
Sbjct 217 ACACCTGAGGCGCACGTGTTCAAGGCGGATTTACCGGGACTGAGGAAGGAAGAGGTGAAA 276
Query 249 GTGGAGGTTGAAGATGGCAATATACTTCAGATAAGCGGAGAGAGGAGTAGTGAGAGTGAA 308
||||||||||| |||||||| |||||||||||||| ||||||||||| | ||||| ||||
Sbjct 277 GTGGAGGTTGAGGATGGCAACATACTTCAGATAAGTGGAGAGAGGAGCAATGAGAATGAA 336
Query 309 GAGAAGAGTGACAAGTGGCACCGTGTGGAGAGGTCAAGTGGGAAGTTCATGAGGAGGTTT 368
||||||| |||||||||||||||||||||| |||| ||||||||||||| ||||||||||
Sbjct 337 GAGAAGAATGACAAGTGGCACCGTGTGGAGCGGTCGAGTGGGAAGTTCACGAGGAGGTTT 396
Query 369 AGGTTGCCGGAGAATGCGAAGATGGAAGAAGTGAAGGCGAGTATGGAGAATGGTGTGTTG 428
||| ||||||||||||| |||||||| ||| | || || |||||||| ||||||||||||
Sbjct 397 AGGCTGCCGGAGAATGCTAAGATGGAGGAAATCAAAGCCAGTATGGAAAATGGTGTGTTG 456
Query 429 TCGGTTACGGTGCCGAAAGTGCCGGAGAAGAAGCCTGAGGTCAAGTCCATAGATATCTCC 488
|||||||| ||||| || ||||| ||||| ||||| ||||| |||||||| ||||||||
Sbjct 457 TCGGTTACCGTGCCCAAGGTGCCAGAGAAAAAGCCAGAGGTTAAGTCCATTGATATCTCT 516
Query 489 GGTTAACAGGAGAAGTTG 506
|||||| ||| ||| |||
Sbjct 517 GGTTAA-AGG-GAA-TTG 531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24564497883
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5