BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937339

Length=466
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G46300.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   590    5e-168


> AT3G46300.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G46310.1); 
Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17015777-17016746 
REVERSE LENGTH=970
Length=970

 Score =  590 bits (319),  Expect = 5e-168
 Identities = 420/468 (90%), Gaps = 9/468 (2%)
 Strand=Plus/Plus

Query  1    ACCCTCCaaaaaaaGCGACCATGGCCTCAAAATGCATAGATGCTTGTGTAAACATCAAAA  60
            ||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct  284  ACCCTCC-AAAAAAGCGACCATGGCCTCAAAGTGCATAGATGATTGTGTAAACATCAAAA  342

Query  61   TAGACTCCATTTGCATCCGGCCTGTTATGACTTACGCCAATCTCTACAAGTGGCCAATGG  120
             ||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct  343  GAGACTCCATTTGCGTCCGGCCGGTTATGACTTACGCCAATCTTTACAAGTGGCCGATGG  402

Query  121  CGGAGGCGGAGTTCGTACGGTCAATCAGTAACGACGGTAGCCAGCGTCGCACCACGGTGG  180
            ||||||| |||||||||||||||||||   ||||||| ||||||| ||||||||||||||
Sbjct  403  CGGAGGCCGAGTTCGTACGGTCAATCAACCACGACGGAAGCCAGCATCGCACCACGGTGG  462

Query  181  TTGACAGCATATCTTGTAGGCAAATGTACCTTAGAAGCTACACTTTTTCAACAAAAGAGA  240
            |||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||
Sbjct  463  TTGACAGCATATCTTGTAGGCAGATGTACCTTAGAAGCTACACATTTTCAACAGAAGAGA  522

Query  241  ACGAAGAAGACAATGATAGAGGA-AGTGGCGAAGCCGCTGATC-GGAGAAACAAACAGAG  298
            |||||||||||  |||| ||||  | ||||||||| | | | | ||||| |||| |||||
Sbjct  523  ACGAAGAAGACGGTGATGGAGGTGA-TGGCGAAGCAGTT-ACCCGGAGACACAATCAGAG  580

Query  299  TTGTTTTCGAGGAGGAGGTGGGAGAAAGAAGGCGGCCAAGAAAGCTACGAGGAAGAACCA  358
            |||||||||||||||||| ||||||||||||||||||||||| |||| | |||| ||| |
Sbjct  581  TTGTTTTCGAGGAGGAGGAGGGAGAAAGAAGGCGGCCAAGAACGCTATGCGGAATAACAA  640

Query  359  AACATCGTCGTGTAGGGCGTTTGTTTTGGGACTCGTATGGAAATGTTTGTCTTGTGCGTC  418
            ||||| |||||||||| ||||||||||  |||| ||| ||||||||||||||||||||||
Sbjct  641  AACATGGTCGTGTAGGACGTTTGTTTTCAGACTAGTACGGAAATGTTTGTCTTGTGCGTC  700

Query  419  CACTACAAAGGTTACTAATATTGATTAGTGATCACTAATGAGAATAAT  466
            |||||| ||||||||||||||||||| |  ||||||| |||| |||||
Sbjct  701  CACTACTAAGGTTACTAATATTGATT-G--ATCACTA-TGAGGATAAT  744



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22153258827


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5