BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937350
Length=533
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46490.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 451 3e-126
AT1G35190.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 213 1e-54
AT3G46480.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 195 5e-49
> AT3G46490.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:17115629-17119451
FORWARD LENGTH=993
Length=993
Score = 451 bits (244), Expect = 3e-126
Identities = 270/282 (96%), Gaps = 3/282 (1%)
Strand=Plus/Plus
Query 1 GTAAGTCTATTGCGAGAATAATGGCTTTGGCGCTCGACTTGGATGTGGATTA-TTTCAAT 59
||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 464 GTAAGTCTATTGCGAAAATAATGGCTTTGGCGCTCGACTTGGATGTGGATTACTTT-AAT 522
Query 60 ACACCGGAGATGCTGGGAAATCCAATTGCAGATATGGTCTTGTTTCACTATGAAGGGAAG 119
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 ACACCAGAGATGCTGGGAAATCCAATTGCAGATATGGTCTTGTTTCACTATGAAGGGAAG 582
Query 120 TCTGATCCCTCGATAGGAATATATGCATGTGGAGCACATTCTGATTTCGGAATGATGTCT 179
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 TCTGATCCCTCGAAAGGAATATATGCATGTGGAGCACATTCTGATTTCGGAATGATGTCT 642
Query 180 CTCTTAGCAACTGATGGTGTAATGGGACTTCAGATTTGCAAGGATAAAGACGTGAAGCCT 239
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 643 CTCTTAGCAACTGATGGTGTCATGGGACTTCAGATATGCAAGGATAAAGACGTGAAGCCT 702
Query 240 CAAAAGTGGGAATATATTCCATCAATTAAAGG-GTCTACATT 280
|||||||||||||||| |||||| |||||||| | ||| |||
Sbjct 703 CAAAAGTGGGAATATACTCCATCGATTAAAGGAGCCTATATT 744
Score = 320 bits (173), Expect = 8e-87
Identities = 195/205 (95%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 273 TCTACATTACATCGGGTACTTGGGAATGGGCAAGACCGATATTCTATTCCATTCTTCCTG 332
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 793 TCTACATTGCATCGGGTACTCGGGAATGGGCAGGACCGATATTCTATTCCATTCTTCCTG 852
Query 333 AAACCGAGTCATGACTGTATAATAGAGTGTCTTCCTAACTGCCAGTCCGAAAACAACCTT 392
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 853 AAACCGAGTCATGACTGTATAATAGAGTGTCTTCCTACCTGCCAGTCTGAAAACAACCTT 912
Query 393 CCCAAATATATATCCAGCGATCAAATGTTCAACGTACATCTCCCCACGTTACAAAGCAGT 452
||| | | ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 913 CCC--A-A-ATATCCAGCGATCAAATGTTCAACGTACATCTCCCAACGTTACAAAGCAGT 968
Query 453 ACATGCACACCTAAAACAGACCTAG 477
|||||||||||||||||||||||||
Sbjct 969 ACATGCACACCTAAAACAGACCTAG 993
> AT1G35190.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:12890423-12892874
FORWARD LENGTH=1353
Length=1353
Score = 213 bits (115), Expect = 1e-54
Identities = 221/271 (82%), Gaps = 12/271 (4%)
Strand=Plus/Plus
Query 7 CTATTGCGAGAATAATGGCTTTGGCGCTCGACTTGGATGT-GGATTA-TTTCAATA-CAC 63
||||||| ||| | |||| || || || ||||||||||| ||| || ||| ||| |
Sbjct 576 CTATTGCAAGACTTTTGGCGTTAGCACTTGACTTGGATGTGGGA-TACTTT-GATAGGA- 632
Query 64 CGGAGATGCTGGGAAATCCAATTGCAGA-TATG-GTCTTGTTTCACTATGAAGGGAAGTC 121
|||||||||| ||||| || |||||| | |||| | | |||| | ||| |||||| ||
Sbjct 633 CGGAGATGCTTGGAAAACCTATTGCA-ACTATGCGAC-TGTTGCGGTATCAAGGGATTTC 690
Query 122 TGATCCCTCGATAGGAATATATGCATGTGGAGCACATTCTGATTTCGGAATGATGTCTCT 181
|||||| |||| |||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 691 TGATCCTTCGAAAGGAATATATGCATGTGGAGCACATTCTGACTTCGGAATGATGACTCT 750
Query 182 CTTAGCAACTGATGGTGTAATGGGACTTCAGATTTGCAAGGATAAAGA-CGTGAAGCCTC 240
||||| |||||||||||||||||||| ||||| ||||| ||||| || || || ||| |
Sbjct 751 GTTAGCCACTGATGGTGTAATGGGACTCCAGATATGCAAAGATAA-GAACGCGATGCCGC 809
Query 241 AAAAGTGGGAATATATTCCATCAATTAAAGG 271
| |||||||||||| | || | ||||||||
Sbjct 810 AGAAGTGGGAATATGTACCGCCGATTAAAGG 840
> AT3G46480.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:17103173-17105594
FORWARD LENGTH=861
Length=861
Score = 195 bits (105), Expect = 5e-49
Identities = 159/184 (86%), Gaps = 8/184 (4%)
Strand=Plus/Plus
Query 276 ACATTACATCGGGTACTTGGGAATGGGCAAGACCGATATTCTATTCCATTCTTCCTGA-A 334
||||| |||||||||||||||||||| |||||||||||||| |||||||||||| | | |
Sbjct 655 ACATTGCATCGGGTACTTGGGAATGGTCAAGACCGATATTCCATTCCATTCTTCAT-AGA 713
Query 335 ACCGAGTCATGACTGTATAATAGAGTGTCTTCCTAACTGCCAGTCCGAAAACAACCTTCC 394
||||||||| |||||| || |||| ||||| |||| ||||||||||||||||||||||||
Sbjct 714 ACCGAGTCACGACTGTCTAGTAGAATGTCTACCTACCTGCCAGTCCGAAAACAACCTTCC 773
Query 395 CAAATATATATCCAGCGATCAAATGTTCAACGTACATCTCCCCACGTTACAAAGCAGT-A 453
||||||| ||||| |||||||||||||||| | || ||| ||||||| | ||| | |
Sbjct 774 CAAATAT----CCAGCTATCAAATGTTCAACGTTCCTCACCCAACGTTACCA-GCAATCA 828
Query 454 CATG 457
||||
Sbjct 829 CATG 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25518946676
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5