BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937358
Length=2026
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46510.1 | Symbols: PUB13, ATPUB13 | plant U-box 13 | chr3:1... 3179 0.0
> AT3G46510.1 | Symbols: PUB13, ATPUB13 | plant U-box 13 | chr3:17123739-17126691
REVERSE LENGTH=2502
Length=2502
Score = 3179 bits (1721), Expect = 0.0
Identities = 1926/2027 (95%), Gaps = 5/2027 (0%)
Strand=Plus/Plus
Query 3 ACAGAGAAGAATCAA-TCAATGGAGGAAGAGAAAGCTTCTGCTGCACAGAGCTTAATCGA 61
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 ACAGAGAAGAATCAATTCAATGGAGGAAGAGAAAGCTTCTGCTGCACAGAGCTTAATCGA 193
Query 62 TGTAGTTAACGAGATTGCTACGATTTCCGATTATCGAATTACGGTGAAGAAGCTTTGTTA 121
||||||||||||||||||| ||||||| |||||||| || || |||||||||||||||||
Sbjct 194 TGTAGTTAACGAGATTGCTGCGATTTCTGATTATCGTATAACAGTGAAGAAGCTTTGTTA 253
Query 122 TAATCTAGCGAGGAGATTGAAGCTGCTTGTTCCTATGTTTGAGGAAATTAAAGAGAGTAA 181
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 254 TAATCTAGCGAGGAGATTAAAGCTGCTTGTTCCTATGTTTGAGGAAATTAGAGAAAGTAA 313
Query 182 CGAACCGATCAACGAAGATACGTTGAGGACTTTGGTGAATTTGAAGGAAGCTATGTGTTC 241
||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 314 CGAACCGATCAGCGAAGATACGTTGAAGACTTTGATGAATTTGAAGGAAGCTATGTGTTC 373
Query 242 AGCGAAGGATTTTCTCAAATTTTGTAGCGAAGGGAGCAAGATTTATCTGGTGATGGAGAG 301
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 374 AGCGAAGGATTATCTCAAATTTTGTAGCCAAGGGAGCAAGATTTATCTGGTGATGGAGAG 433
Query 302 GGAACAAGTGACAAGTAAATTGATGGAGGTGTCTGTTAAGTTAGAACAATCTTTGAGCCA 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 434 GGAACAAGTGACAAGTAAATTGATGGAGGTGTCTGTTAAGTTAGAACAATCTTTAAGCCA 493
Query 362 GATTCCGTATGAGGATCTCGATATATCGGATGAAGTTAGAGAACAGGTTGAGCTGGTTCT 421
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 GATTCCATATGAAGAACTCGATATATCGGATGAAGTTAGAGAACAGGTTGAGCTGGTTCT 553
Query 422 CAGCCAGTTTCGGCGGGCTAAAGGAAGAGTAGATGTGTCAGACGATGAACTATATGAAGA 481
|| ||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 554 TAGTCAGTTTCGGCGAGCTAAAGGAAGAGTAGATGTATCAGATGATGAGCTATATGAAGA 613
Query 482 TCTTCAGTCGCTGTGCAACAAAAGTAGTGATGTAGATGCTTGTCAGCCTGCCCTGGAGCG 541
|||||||||||| |||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 614 TCTTCAGTCGCTTTGCAACAAAAGTAGTGATGTAGATGCTTATCAGCCTGTGCTAGAGCG 673
Query 542 GGTTGCGAAGAAGTTACAGTTGATGGAGATTCCTGACCTAGCTCAAGAATCAGTGGCTCT 601
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 674 GGTTGCGAAGAAGTTACATTTGATGGAGATTCCTGACCTAGCTCAAGAATCAGTGGCTCT 733
Query 602 GCACGAAATGGTTGCTTCGAGCGGTGGAGACGCTGGTGAAAACATTGAGGAGATGGCAAT 661
||| |||||||||||||| ||||||||||| | ||||||||| |||||||||||||||||
Sbjct 734 GCATGAAATGGTTGCTTCAAGCGGTGGAGATGTTGGTGAAAATATTGAGGAGATGGCAAT 793
Query 662 GGTACTAAAAAAGATTAAGGATTTTGTGCAGACGGAGGATGACAATGGTGAGGAGCAGAA 721
|||| |||| | |||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 794 GGTATTAAAGATGATTAAGGATTTTGTGCAGACGGAGGATGATAATGGCGAGGAGCAGAA 853
Query 722 AGTAGGGGTTAACTCAAGAAACAATGGACAAACTTCTACGGCAGCGAGTCAGAAGATACC 781
|||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 854 AGTAGGAGTTAACTCTAGAAGCAATGGACAGACTTCTACGGCAGCGAGTCAGAAGATACC 913
Query 782 CGTAATTCCTGATGATTTCCGTTGTCCGATATCGCTGGAAATGATGAGAGATCCAGTTAT 841
|| |||||||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 914 TGTGATTCCTGATGATTTTCGCTGTCCGATTTCGCTGGAAATGATGAGAGATCCAGTTAT 973
Query 842 AGTTTCATCAGGGCAGACCTACGAACGAACCTGTATTGAGAAGTGGATAGAAGGTGGACA 901
||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||
Sbjct 974 TGTTTCATCAGGGCAGACATACGAACGCACATGTATTGAGAAATGGATAGAAGGTGGACA 1033
Query 902 CTCGACATGTCCAAAAACACAGCAGGCGCTAACAAGCACAACCCTCACACCAAACTATGT 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 CTCGACATGTCCAAAAACACAGCAGGCGCTAACAAGCACAACCCTCACACCAAACTATGT 1093
Query 962 TCTCCGTAGTCTCATAGCTCAGTGGTGCGAGGCCAATGATATCGAGCCTCCAAAGCCTCC 1021
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1094 TCTCCGTAGTCTCATAGCTCAGTGGTGCGAGGCCAACGATATTGAGCCTCCAAAGCCTCC 1153
Query 1022 GAGCAGTTTAAGACCCAGAAAAGTATCGTCATTCTCGTC-CCCAGCAGAAGCAAACAAGA 1080
|||||||||||||||||||||||||||||| ||||| || ||| |||||||| |||||||
Sbjct 1154 GAGCAGTTTAAGACCCAGAAAAGTATCGTCCTTCTCATCTCCC-GCAGAAGCGAACAAGA 1212
Query 1081 TTGAAGATCTTATGTGGAGACTCGCTTATGGAAACCCTGAGGACCAACGATCTGCAGCTG 1140
|||||||||||||||||||||| || || |||||||| ||||||||||||||||||||||
Sbjct 1213 TTGAAGATCTTATGTGGAGACTTGCGTACGGAAACCCCGAGGACCAACGATCTGCAGCTG 1272
Query 1141 GAGAAATCCGCCTTCTTGCAAAACGAAATGCAGATAACCGTGTGGCTATTGCCGAAGCTG 1200
| |||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||
Sbjct 1273 GGGAAATCCGCCTTCTTGCAAAACGAAATGCAGACAACCGCGTGGCCATAGCCGAAGCTG 1332
Query 1201 GAGCCATACCTCTTCTCGTAGGCCTCCTCTCAACTCCTGATTCTCGTATCCAAGAACATT 1260
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1333 GAGCCATACCTCTTCTCGTAGGTCTCCTCTCAACTCCTGATTCTCGTATTCAAGAACATT 1392
Query 1261 CAGTAACAGCTCTCCTAAACCTCTCTATATGTGAGAACAACAAAGGAGCCATTGTTTCTG 1320
| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1393 CGGTAACAGCTCTTCTAAACCTCTCCATATGTGAGAACAACAAAGGAGCCATTGTTTCAG 1452
Query 1321 CTGGAGCAATTCCTGGTATAGTTCAAGTGCTCAAGAAAGGAAGCATGGAGGCCAGAGAGA 1380
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1453 CTGGAGCTATTCCTGGTATAGTTCAAGTGCTTAAGAAAGGAAGCATGGAGGCCAGAGAGA 1512
Query 1381 ATGCGGCGGCCACACTGTTCAGTCTATCAGTGATTGATGAAAACAAAGTGACTATCGGTG 1440
|||||||||| ||||| ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1513 ATGCGGCGGCTACACTTTTCAGTCTATCAGTGATCGATGAAAATAAAGTGACTATCGGTG 1572
Query 1441 CATTAGGAGCAATTCCACCGCTCGTTGTATTACTTAATGAAGGTACACAAAGAGGCAAGA 1500
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 CCTTAGGAGCAATTCCGCCACTCGTTGTATTACTTAATGAAGGTACACAAAGAGGCAAGA 1632
Query 1501 AAGATGCTGCTACTGCACTCTTTAACCTCTGTATATACCAAGGAAACAAAGGAAAAGCCA 1560
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1633 AAGATGCTGCTACTGCACTCTTTAACCTCTGTATATACCAAGGAAACAAAGGAAAAGCTA 1692
Query 1561 TACGTGCAGGAGTGATTCCCACATTGACTAGACTCTTGACAGAGCCCGGAAGCGGAATGG 1620
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1693 TACGTGCAGGAGTGATTCCCACGTTGACTAGACTCTTGACAGAGCCCGGAAGCGGAATGG 1752
Query 1621 TCGATGAGGCACTCGCGATTTTGGCGATTCTCTCTAGCCACCCCGAAGGGAAAGCAATCA 1680
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1753 TCGATGAGGCACTCGCGATTTTGGCGATTCTCTCTAGCCACCCCGAAGGAAAAGCAATCA 1812
Query 1681 TAGGATCCTCTGATGCAGTCCCAAGTCTGGTTGAGTTTATCAGAACTGGCTCGCCTAGAA 1740
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1813 TAGGATCCTCTGATGCAGTCCCAAGTTTGGTTGAGTTTATCAGAACTGGCTCGCCTAGAA 1872
Query 1741 ACAGAGAAAACGCAGCTGCGGTTCTAGTCCACCTCTGTTCTGGAGACCCACAACATCTTG 1800
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1873 ACAGAGAAAACGCAGCTGCTGTTCTAGTCCACCTCTGTTCTGGAGACCCACAACATCTTG 1932
Query 1801 TCGAAGCGCAGAAACTCGGCCTTATGGGTCCATTGATAGATTTGGCTGGAAATGGGACGG 1860
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1933 TCGAAGCGCAGAAACTCGGCCTTATGGGTCCATTGATAGATTTAGCTGGAAATGGGACGG 1992
Query 1861 ATAGAGGGAAACGAAAAGCAGCTCAGTTGCTTGAACGCATCAGCCGTCTCGCTGAACAGC 1920
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1993 ATAGAGGGAAACGAAAAGCAGCGCAGTTGCTTGAACGCATCAGCCGTCTCGCTGAACAGC 2052
Query 1921 AGAAGGAAACGGCTCAGTCACAATCCG-AAGAAGAAGCTGAACCAACAAATTCAGTATCC 1979
|||||||||||||| ||||||| ||| |||||||||||||||||||| || ||| ||||
Sbjct 2053 AGAAGGAAACGGCTGTGTCACAA-CCGGAAGAAGAAGCTGAACCAACACATCCAGAATCC 2111
Query 1980 ACCGCAGAAGCTGCAGATACTTAAAGATTGTCTTTGTTTTGGGTCCT 2026
||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2112 ACCACAGAAGCTGCAGATACTTAAAGATTGTCTTTGTTTTGGATCCT 2158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100401090000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5