BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937360
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46540.1 | Symbols: | ENTH/VHS family protein | chr3:171340... 1443 0.0
> AT3G46540.1 | Symbols: | ENTH/VHS family protein | chr3:17134091-17135587
REVERSE LENGTH=1213
Length=1213
Score = 1443 bits (781), Expect = 0.0
Identities = 903/962 (94%), Gaps = 7/962 (1%)
Strand=Plus/Plus
Query 1 TGGTTCTTGAGAATACTTTG-AAGAAAGATGTCAATGATGAGCAAAAAC-AGAAGCAGCA 58
|||||||||| |||| |||| |||||||||||||||||||||| | ||| |||||||||
Sbjct 149 TGGTTCTTGATAATAATTTGAAAGAAAGATGTCAATGATGAGC-AGAACTCGAAGCAGCA 207
Query 59 TCGCCAAGGGAACACCATCGTTCCTTGAGTTGAAGAAACAAGCCTCTTTTTTCTTCAAAG 118
|||||| |||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 208 TCGCCATGGGAACACCATCTTTCCTTGAGTTGAAGAAACAAGCTTCATTTTTCTTCAAAG 267
Query 119 AGAAGCTCAAAACGGCGCGTTTAGCTCTCACCGATGTTACTCCTCTTCAACTAATGACTG 178
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 AGAAGCTTAAAACGGCGCGTTTAGCTCTCACCGATGTTACTCCTCTTCAACTAATGACTG 327
Query 179 AGGAAGCTACGGATGGTGAGTCATGTGGACCAAATACACAAACCTTAGGAACCATTTCAA 238
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 328 AGGAAGCTACGGATGGTGAGTCATGTGGACCAAATACACAAACCTTAGGGTCCATTTCAA 387
Query 239 AGGCCGCTTTCGAGTTTGAAGATTACTTGGCCATTGTCGAAGTCTTGCACAAAAGATTGG 298
|||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 388 AGGCTGCTTTTGAGTTTGAAGATTACTTGGCGATTGTTGAAGTCTTGCACAAAAGATTGG 447
Query 299 CAAGGTTTGATAAGAGAAACTGGAGGATGGCTTATAACTCACTCATAGTTGTTGAACATT 358
||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 448 CAAAGTTCGATAAGAGAAACTGGAGGATGGCTTATAACTCACTAATAGTTGTTGAGCATT 507
Query 359 TGCTCACTCATGGACCAGAGAGTGTTTCCGATGAGTTTCAAGGCGATAGAGATGTTATCT 418
| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 508 TACTCACTCATGGACCAGAGAGTGTTTCCGATGAGTTTCAAGGTGATATAGATGTTATCT 567
Query 419 TCCAAATGCAGACTTTCCAACAGATCGACGAGAAAGGGTTTAATTGGGGATTAGCTGTTA 478
||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 568 CCCAAATGCAAACCTTCCAACAGATTGACGAGAAAGGGTTTAATTGGGGATTAGCTGTTA 627
Query 479 GAAAGAAAGCAGAGAAGGTTTTGAAGCTACTTGAGAAAGGGGAATTGCTTAAGGAAGAGA 538
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct 628 GAAAGAAAGCAGAGAAGGTTTTAAAGCTACTTGAGAAAGGGGAATTACTTAAGGAAGAAA 687
Query 539 GGAAGCGAGCTCGTGAGCTGTCTCGAGGGATTCAAGGTTTTGGTAGCTTCAACCACAAGT 598
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 688 GGAAGCGAGCTCGTGAGCTGTCTCGAGGGATTCAAGGTTTCGGTAGCTTTAACCACAAGT 747
Query 599 CTTCATCTCATTCTATGTCAGAGAATGAAGTCGTACAAGAATCTACAGTCTATAGGAAAT 658
|||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 748 CTTCATCTCATTCTTTGTCAGAGCATGAAGTCTTACAAGAATCTACAGTCTATAGGAAAT 807
Query 659 GCAATTCCAACTTTACCAAGAAGCACAATGAGGATGACCAAGAGAACACTATGGTTTCTC 718
| |||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 808 GTAATTCCAATTTTACCAAGAATTACGATGAGGATGACCAAGAGAACACTATGGTTTCTC 867
Query 719 CTAATGACGCCGACAACTTTCCTCAGCCGCTGGTAACTGACCCGAGGGAGGAATCTAGGA 778
||||||||||| || |||||||||||||||||| |||||||||| |||||||||||||
Sbjct 868 CTAATGACGCCAACCTTTTTCCTCAGCCGCTGGTAGCTGACCCGAGCGAGGAATCTAGGA 927
Query 779 CGAGTATGAAAGAAAATATGGATCCTGAAGATGATGAGAACACAGAGGTAAACCCACTTT 838
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 CGGGTATGAAAGAAAATATGGATCCTGAAGATGATGAGAACACAGAGGTAAACCCACTTT 987
Query 839 TGGGTTCTCTTAAAAAGGAGGGTCAAGAACTAGCCGGAGAAGACGAGAACCATCCATTTA 898
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 TGGGTTTTAGTAAAAAGGAGGGTCAAGAACTAGCCGGAGAAGACGAGAACCATCCATTTA 1047
Query 899 CGGATGGTGAGAGTAAGCATACAGTAGTCTCATTGCTTGATGAGAATACAGACTGAAATT 958
||||||| |||||||||||||||||||||| | |||||||||||| ||||| | |||||
Sbjct 1048 CGGATGGCGAGAGTAAGCATACAGTAGTCT--T-GCTTGATGAGAACACAGATT-AAATT 1103
Query 959 TT 960
||
Sbjct 1104 TT 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5