BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937361
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46550.1 | Symbols: SOS5 | Fasciclin-like arabinogalactan fa... 1997 0.0
> AT3G46550.1 | Symbols: SOS5 | Fasciclin-like arabinogalactan
family protein | chr3:17136456-17137874 REVERSE LENGTH=1419
Length=1419
Score = 1997 bits (1081), Expect = 0.0
Identities = 1216/1282 (95%), Gaps = 6/1282 (0%)
Strand=Plus/Plus
Query 24 ATGGCGAACGTAATTTCAATTTCCCATTTTACCCTTCTCGCATTACCTTATTTACTTCTC 83
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAACGTAATCTCAATTTCCCATTTTACCCTTCTCGCATTACCTTATTTACTTCTC 60
Query 84 CTCTTATCCTCCACCGCCGCCGCCATCAACGTCACCGCCGtcctctcctcattccctaac 143
||| |||| |||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 61 CTCCTATCTTCCACCGCCGCCGCAATTAACGTCACCGCCGTCCTCTCCTCTTTCCCTAAT 120
Query 144 ctttcctctttctccaacctcctcgtctcctccGGCATCGCCGCTGAGCTTTCCGGTAGG 203
|| || |||||||| |||||||||||||| ||||||||||| || || || ||||||||
Sbjct 121 CTCTCATCTTTCTCAAACCTCCTCGTCTCTTCCGGCATCGCTGCCGAACTCTCCGGTAGA 180
Query 204 AACTCATTAACCCTCCTCGCCGTTCCCAATTCTCAATTCTCCTCCGCCACCTTGGACCTC 263
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 AACTCATTAACCCTCCTCGCCGTTCCCAATTCTCAATTCTCCTCCGCCTCCTTGGACCTC 240
Query 264 ACGCGCCGCCTACCTCCTTCAGCCCTCGCAGATCTCCTCCGCTTCCATGTCCTTCTCCAG 323
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 241 ACGCGCCGCCTACCTCCTTCCGCCCTAGCAGATCTCCTCCGCTTCCATGTCCTCCTCCAG 300
Query 324 TTCCTCTCAGATTCCGATCTCCGACGTCTCCCACCGTCAGGCTCCGCAGTTACTACTCTC 383
||||| ||||||||||||||||||||| | ||||||||||||||||| || |||||||||
Sbjct 301 TTCCTTTCAGATTCCGATCTCCGACGTATTCCACCGTCAGGCTCCGCCGTCACTACTCTC 360
Query 384 TACGAAGCTTCCGGTCGTACATTCTTTGGATCTGGATCCGTTAACGTCACCCGTGACCCA 443
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 TACGAAGCTTCCGGTCGTACATTCTTTGGATCTGGATCCGTTAACGTAACCCGTGACCCG 420
Query 444 GCTTCAGGATCCGTCACGATCGGATCTCCAGCCACCAAAAACGTCACTGTGTTAAAGCTT 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCTTCAGGATCCGTCACGATCGGATCTCCAGCCACCAAAAACGTCACTGTGTTAAAGCTT 480
Query 504 CTCGAGACCAAACCTCCCAACATAACCGTCCTCACCGTCGACTCCCTCATCGTCCCCACC 563
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 CTCGAGACCAAACCTCCCAACATAACCGTCCTCACCGTGGACTCCCTCATCGTCCCCACC 540
Query 564 GGAATCGATATCACTGCCTCGGAGACTCTCACTCCACCGCCGACATCAACATCTCTCTCC 623
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 GGAATCGATATCACCGCATCGGAGACTCTCACTCCACCGCCGACGTCAACATCTCTCTCC 600
Query 624 CCTCCTCCGGCGGGAATCAACCTCACTCAGATACTAATCAACGGCCACAACTTCAACGTC 683
||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 601 CCTCCACCGGCGGGAATCAATCTCACTCAGATACTAATCAACGGACACAACTTCAACGTC 660
Query 684 GCTCTCTCTCTCCTCGTCGCTTCCGGAGTCATAACAGAATTCGAAAACGACGAACGTGGC 743
||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 GCTCTATCCCTCCTCGTCGCTTCCGGTGTCATAACAGAATTCGAAAACGACGAACGTGGC 720
Query 744 GCCGGAATCACCGTCTTCGTCCCCACCGACTCCGCCTTCTCCGATCTCCCGTCCAATGTC 803
||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 721 GCCGGCATCACAGTCTTCGTCCCCACCGACTCCGCCTTCTCCGATCTCCCTTCCAACGTT 780
Query 804 AACCTCCAGTCTTTACCGGCGGCGCAAAAAGCCTTCGTGTTAAAATTCCATGTGCTACAT 863
||||||||||| |||||||||| ||||||||| ||||||||||||||||| |||||||||
Sbjct 781 AACCTCCAGTCATTACCGGCGGAGCAAAAAGCATTCGTGTTAAAATTCCACGTGCTACAT 840
Query 864 TCATACTACACACTCGGCTCGCTAGAATCAATAACCAATCCGGTTCAACCGACATTAGCC 923
||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 841 TCATACTACACTCTCGGTTCACTAGAATCAATAACCAACCCGGTTCAACCGACATTAGCC 900
Query 924 ACTGAAGAAATGGGAGCCGGTTCTTACACTCTCAACATCTCCCGGGTTAACGGGTCAATC 983
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 ACTGAAGAAATGGGAGCCGGTTCATACACTCTCAACATCTCCCGGGTTAACGGGTCAATC 960
Query 984 GTAACGATCAATTCGGGTGTGGTTTTAGCTGTTGTGACTCAAACGGCTTTTGATCAAAAC 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTAACGATCAATTCGGGTGTGGTTTTAGCTGTTGTGACTCAAACGGCTTTTGATCAAAAC 1020
Query 1044 CCGGTTTCTGTTTTCGGAGTATCCAAAGTTCTTTTGCCTAAAGAACTGTTTCCAAAATCG 1103
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1021 CCGGTTTCTGTTTTCGGAGTATCCAAAGTTCTTTTGCCTAAAGAACTATTTCCAAAATCG 1080
Query 1104 GGTCAACCCGTTGCAACAGCTCCTCCACATGAGATATCTTTGTCGCCGGAGAGTTCT-GA 1162
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct 1081 GGTCAACCCGTTGCCACAGCTCCTCCACAGGAGATTTCTTTGTCGCCGGAGAGTTCTAG- 1139
Query 1163 TGAACAGCCGTCGA-GATTAGTATCACCACCGCGTGAGATAGTTTCTTCCGGCACGGTTA 1221
|||||||||||| | || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1140 TGAACAGCCGTC-ACGACTAGTATCACCACCGCGTGAGATAGTTTCTTCCGGCGCGGTTA 1198
Query 1222 AAACAACACTTGGTTTCTTGGCCTTGTGGTGTTGGTGTATAGCATTTTGTTATGTTTTGG 1281
||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AAAGACCACTTGGTTTCTTGGTCTTGTGGTGTTGGTGTATAGCATTTTGTTATGTTTTGG 1258
Query 1282 TATGAtttttttt-cttt-ttt 1301
||||||||||||| |||| |||
Sbjct 1259 TATGATTTTTTTTTCTTTCTTT 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64256697600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5