BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937371
Length=1810
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46600.1 | Symbols: | GRAS family transcription factor | ch... 2754 0.0
AT5G59450.1 | Symbols: | GRAS family transcription factor | ch... 771 0.0
> AT3G46600.1 | Symbols: | GRAS family transcription factor |
chr3:17157924-17159965 FORWARD LENGTH=2042
Length=2042
Score = 2754 bits (1491), Expect = 0.0
Identities = 1709/1813 (94%), Gaps = 20/1813 (1%)
Strand=Plus/Plus
Query 1 TTCTAGTGAGATTCTGTTTCATGGATGCTATTTTGCCAGTACCTGTTGATGGGTTCAGAT 60
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 105 TTCTAGAGAGATTCTGTTTCATGGATGCTATTTTGCCAGTACCCGTTGATGGGTTCAGAT 164
Query 61 TCGACAACGGTTCTGGATCTTGTTGCAAACCAAGGAACAATCTTGAATCTGGTACTACCA 120
|||||| |||||||||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 165 TCGACACCGGTTCTGGATCTTGTTGCAAACCGAGGAACAATCTTGAATCTGGGACGACCA 224
Query 121 ATCGTTTCACTTGTTTCAACGAATCTGAATCTCAGAGCAACCCTTCTCCGACCGAGTCTA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 ATCGTTTCACTTGTTTCAACGAATCTGAATCTCAGAGCAACCCTTCTCCGACCGAGTCTA 284
Query 181 AGGTATGTTCAGATTACCTCCCTGTCTTTAAGTACATCAATGACATGTTGATGGAAGAAG 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 285 AGGTATGTTCAGATTACCTTCCTGTCTTTAAGTACATCAATGACATGTTGATGGAAGAAG 344
Query 241 ATCTTGAAGGACAGTCTTGTATGTTGGAAGACAGTTTGGCTTTACAAGCCGCTGAGAGAT 300
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 345 ATCTTGAAGGTCAGTCTTGTATGTTGGAAGACAGTTTGGCTTTACAAGCCGCAGAGAGAT 404
Query 301 CTTTCTAT-GAAGTACTTCAGGATCAAACTCCTCCACCGTCTGATCAAATCTCTGGTGAT 359
|||||| | ||||| ||||| |||| || | | || | |||||| ||||||
Sbjct 405 CTTTCT-TCGAAGTGCTTCAAGATC-AA-------A-C-TC----C-AATCTCGGGTGAT 448
Query 360 CTAGAGGATGGTTCTCTTGGAAACTTCAGTTCTATAACGAGTTTGCATCAACCTGAAGTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 CTAGAGGATGGTTCTCTTGGAAACTTCAGTTCTATAACGAGTTTGCATCAACCTGAAGTT 508
Query 420 TCAGAGGAGTCAACCAGAAGGTATCGACACAGGGATGATGATGAAGATGATGATTTTGAG 479
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 509 TCAGAGGAGTCAACCAGAAGGTATCGACATAGGGATGATGATGAAGATGATGATCTTGAG 568
Query 480 GGTGGAAGGAAATCGAAGCTTCCTGCAATATCTACTGTGGATGAGTTAGCAGAGAAGTTT 539
||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||
Sbjct 569 AGTGGAAGGAAATCGAAGCTCCCTGCGATTTCTACGGTGGATGAGTTAGCAGAGAAGTTT 628
Query 540 GAGGAAGTGTTGTTGGTATGTCAAAAGAATGATCAGGGAGAAGCAACAGAGAAGAAAACA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 629 GAGGAAGTGTTGTTGGTATGTCAAAAGAATGATCAGGGAGAAGCAACAGAGAAGAAAACA 688
Query 600 AGACAAGCAAAGGGTTCATCGAATCGATCCAAGCAGCAAAAGTCAGATCAGCCAGTGGAT 659
||||| | ||| || ||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 689 AGACACGTAAAAGGCTCATCGAATCGATACAAGCAGCAAAAGTCAGATCAGCCAGTAGAT 748
Query 660 ATGAGGAACCTTTTGATGCAATGCGCGCAAGCTGTGGCGAGCTTTGACCAGAGAAGAGCT 719
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 749 ATGAGGAATCTTTTGATGCAATGCGCGCAAGCTGTGGCGAGTTTTGACCAGAGAAGAGCT 808
Query 720 TCTGAGAAACTCAAGGAGATAAGAGAACACTCTTCTAGCCACGGCGATGCAACTCAGAGA 779
| ||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||| |||
Sbjct 809 TTTGAGAAACTGAAGGAGATAAGAGAACACTCTTCTCGCCACGGTGATGCGACTCAAAGA 868
Query 780 CTTGGTTATCACTTCGCTGAGGCGCTTGAAGCGCGTATTACTGGAACCATGACTACACCA 839
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 869 CTTGGTTATCACTTTGCTGAGGCGCTTGAAGCTCGTATTACAGGAACCATGACTACACCA 928
Query 840 ATATCTGCTACTTCTAGTAGAACATCAATGGTGGACATTTTGAAGGCGTACAAGGGGTTT 899
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 929 ATATCTGCTACTTCTAGCAGAACATCAATGGTGGACATTTTGAAGGCGTACAAGGGATTT 988
Query 900 GTTCAGGCTTGTCCCACCTTAATAATGTGTTATTTCACTGCAAACAGAACAATTGTTGAG 959
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 989 GTTCAGGCTTGCCCCACCTTAATAATGTGTTATTTCACTGCAAACAGAACAATCAATGAG 1048
Query 960 CTTGCTTCCAAAGCAACCACACTTCACATCATTGATTTTGGGATCCTCTATGGATTTCAG 1019
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1049 CTTGCTTCCAAAGCAACCACACTTCACATCATTGATTTTGGGATTCTCTATGGATTTCAA 1108
Query 1020 TGGCCTTGTCTGATACAAGCTCTT-TCAAAACGTGACATCGGACCACCACTGCTCCGTGT 1078
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1109 TGGCCTTGTCTGATACAAGCT-TTGTCAAAACGTGACATCGGACCACCACTGCTCCGTGT 1167
Query 1079 GACAGGTATCGAGCTGCCTCAGTCAGGCTTCCGCCCATCAGAGCGGGTAGAAGAGACCGG 1138
||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1168 GACTGGTATCGAGCTTCCTCAGTCAGGTTTCCGTCCATCAGAGCGGGTAGAAGAGACCGG 1227
Query 1139 GCGAAGACTGAAGAGATTCTGTGACAAGTTCAAAGTCCCGTTTGAGTACAGTTTCATAGC 1198
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1228 GCGAAGACTAAAGAGGTTCTGTGACAAGTTCAATGTCCCGTTTGAGTACAGTTTCATAGC 1287
Query 1199 CAAAAACTGGGAGAACATAACTCTTGATGATCTGGTGATCAATAGTGGAGAGACAACAGT 1258
||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1288 CAAGAATTGGGAGAACATAACTCTTGATGATCTGGTGATCAATAGTGGCGAGACAACAGT 1347
Query 1259 TGTCAACTGCATCCTCCGGCTACAATATACGCCTGATGAAACCGTGTCCCTCAACTCACC 1318
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1348 TGTCAACTGCATCCTCCGGCTACAATATACACCTGATGAAACCGTGTCCCTCAACTCACC 1407
Query 1319 AAGAGACACGGCTCTGAAACTATTCAGAGATATCAATCCTGACCTCTTTGTGTTTGCAGC 1378
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1408 GAGAGACACGGCTCTGAAACTATTCAGAGACATCAACCCTGACCTCTTTGTGTTTGCAGA 1467
Query 1379 GATCAACGGGACGTACAATTCGCCCTTCTTCCTAACAAGGTTCAGAGAAGCTCTGTTCCA 1438
||| |||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1468 GATTAACGGGACTTACAATTCACCCTTCTTCCTAACAAGGTTCAGAGAAGCTCTCTTCCA 1527
Query 1439 TTGCTCATCACTCTTTGACATGTATGAGACCACATTATCAGAAGACGACAATTGCAGGAC 1498
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 TTGCTCGTCACTCTTTGACATGTATGAGACCACATTATCAGAAGACGACAATTGCAGGAC 1587
Query 1499 CCTGGTGGAGAGGGAGCTAATCATAAGAGATGCAATGAGTGTGATAGCCTGTGAAGGGTC 1558
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 ACTGGTGGAGAGGGAACTAATCATAAGAGATGCAATGAGTGTGATAGCCTGTGAAGGGTC 1647
Query 1559 TGAGCGGTTTGCAAGGCCCGAGACATACAAGCAATGGCAGGTTAGGATTTTAAGAGCCGG 1618
|||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||
Sbjct 1648 TGAGCGGTTTGCAAGGCCAGAGACCTACAAGCAATGGCAGGTTAGGATTCTAAGAGCAGG 1707
Query 1619 GTTTAGACCAGCGAAACTAAACAAACAGATCGTAAAGGACGGGAAAGAAATAGTGAAACA 1678
||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| |
Sbjct 1708 ATTTAGACCAGCGAAACTAAGCAAACAGATAGTAAAGGACGGGAAAGAGATAGTGAAAGA 1767
Query 1679 ACGTTACCACAAAGATTTCGTGATCGACAACGATAACAACTGGATGTTTCAGGGCTGGAA 1738
|||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1768 ACGTTACCACAAAGATTTTGTGATCGACAATGATAACCACTGGATGTTTCAGGGCTGGAA 1827
Query 1739 AGGAAGAGTCCTCTATGCTGTTTCCTGCTGGAAACCTGCTAAGAAGCAATAAA-CAAATC 1797
|||||||||||| ||||||||||| ||||||||||||||||||||| |||||| || ||
Sbjct 1828 AGGAAGAGTCCTTTATGCTGTTTCTTGCTGGAAACCTGCTAAGAAGTAATAAAACAGTTC 1887
Query 1798 TGTAGTCATTTGC 1810
|||| ||||||||
Sbjct 1888 TGTAATCATTTGC 1900
> AT5G59450.1 | Symbols: | GRAS family transcription factor |
chr5:23974668-23976791 FORWARD LENGTH=2124
Length=2124
Score = 771 bits (417), Expect = 0.0
Identities = 917/1151 (80%), Gaps = 64/1151 (6%)
Strand=Plus/Plus
Query 672 TTGATGCAATGCGCGCAAGCTGTGGCGAGCTTTGACCAGAGAAGAGCTTCTGAGAAACTC 731
|||| |||||| || |||||||| |||||||||||||||||||||||| | || ||||||
Sbjct 822 TTGACGCAATGTGCTCAAGCTGTAGCGAGCTTTGACCAGAGAAGAGCTACAGATAAACTC 881
Query 732 AAGGAGATAAGAGAACACTCTTCTAGCCACGGCGATGCAACTCAGAGACTTGGTTATCAC 791
||||||||||||| ||||||||||||| | || |||| ||| || ||||| | || | ||
Sbjct 882 AAGGAGATAAGAGCACACTCTTCTAGCAATGGAGATGGAACACAAAGACTAGCTTTTTAC 941
Query 792 TTCGCTGAGGCGCTTGAAGCGCGTATTACTGGAACCATGACT-A-CACC----AAT-ATC 844
|| || ||||||||||| || ||||| ||||||| ||| || | | || | |||
Sbjct 942 TTTGCAGAGGCGCTTGAGGCACGTATCACTGGAAACAT--CTCACCGCCTGTTTCTAATC 999
Query 845 TG-CTACTTCTAGTA-GAACATCAATGGTGGACATTTTGAAGGCGTACAAGGGGTTTGTT 902
| | |||| || | | ||||| ||||||||||||||||| ||||||||| |||||||
Sbjct 1000 CGTTTCCTTCAAGCACG-ACATCGATGGTGGACATTTTGAAAGCGTACAAGCTGTTTGTT 1058
Query 903 CAGGCTTGTCCCACCTTA-ATAATGTG-TTATTTCACTGCAAACAGAA-CAATTGT-TGA 958
|| ||||||||| | || ||| || ||| ||| |||| |||| || | ||| | ||
Sbjct 1059 CATACTTGTCCCATC-TATGTAA-CTGATTACTTCGCTGCGAACA-AATCGATT-TACGA 1114
Query 959 GCTTGCT-TCCAAAGCAACCACA-CTTCACATCA-TTGATTTTGGGA-TCCTCTATGGAT 1014
|||||| | |||||||| | | |||||||| | |||||||| ||| | ||||| || |
Sbjct 1115 ACTTGCTAT-GAAAGCAACTA-AGCTTCACAT-AGTTGATTTT-GGAGTTCTCTACGGCT 1170
Query 1015 TTCAGTGGCCTTGTCTGATACAAGCTCTTTCAAAACGTGA-C-ATCGGACCACCACTGCT 1072
|||| ||||||||| || ||| |||||| || |||| || | |||||||||| ||||
Sbjct 1171 TTCAATGGCCTTGTTTGTTACGAGCTCTGTCTAAAC--GACCGGGCGGACCACCAATGCT 1228
Query 1073 CCGTGTGACAGGTATCGAGCTGCCTC-AGTCAGGCTTCCGCCCATCAGAGCGGGTAGAAG 1131
|| ||||| || ||||||||||| | || | || || || || ||||| || || ||||
Sbjct 1229 TCGGGTGACTGGAATCGAGCTGCCACAAG-CGGGTTTTCGTCCTTCAGACCGCGTTGAAG 1287
Query 1132 AGACCGGGCGAAGACTGAAGAGATTCTGTGA-CAAGTTCAAAGTCCCGTTTGAGTACAGT 1190
|||| || ||||||||||| || ||||| || | |||| || || || ||||||| ||
Sbjct 1288 AGACTGGTCGAAGACTGAAAAGGTTCTGCGATC-AGTTTAATGTTCCTTTTGAGTTCAAC 1346
Query 1191 TTCATAGCCAAAAACTGGGAGAA-CATAACTCTTGATGATCTGGTGATCAATAGTGGAGA 1249
|||||||||||||| ||||| || ||| ||||||||||| || |||||||| |||||
Sbjct 1347 TTCATAGCCAAAAAATGGGA-AACCATCACTCTTGATGAACTTATGATCAATCCAGGAGA 1405
Query 1250 GACAACAGTTGTCAACTGCA-TCCTCCGGCTACAATATACGCCTGATGAAACCGTGTCCC 1308
|||||| || |||||||||| || | ||| ||||||| || ||||||||||| |||| |
Sbjct 1406 GACAACGGTCGTCAACTGCATTCAT-CGGTTACAATACACTCCTGATGAAACTGTGT-CA 1463
Query 1309 TCA-ACTCACCAAGAGACACGGCTCTGAAACTATTCAGAGATATCAATCCTGACCTCTTT 1367
| | |||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1464 TTAGACTCTCCAAGAGACACGGTTCTGAAGCTATTCAGAGATATCAATCCTGACCTCTTT 1523
Query 1368 GTGTTTGCAGCGATCAACGGGACGTACAATTCGCCCTTCTTCCTAACAAGGTTCAGAGAA 1427
|||||||||| ||| ||||| | |||||| || || |||||| | || |||||| |||||
Sbjct 1524 GTGTTTGCAGAGATTAACGGAATGTACAACTCTCCTTTCTTCATGACGAGGTTCCGAGAA 1583
Query 1428 GCTCTGTTCCATTGCTCATCACTCTTTGACATGTATGAGACCACATTATCA-G-A-AG-A 1483
|| || || |||| ||| |||||||||||||||| ||| |||||| || || | | || |
Sbjct 1584 GCGCTTTTTCATTACTCTTCACTCTTTGACATGTTTGACACCACAATA-CACGCAGAGGA 1642
Query 1484 CGA---CAATTGCAGGACCCTGGTGGAGAGGGAGCTAATCATAAGAGATGCAATGAGTGT 1540
|| ||| |||| | ||| ||||||| ||| || | | ||||| || ||||| ||
Sbjct 1643 TGAGTACAAAAACAGGTCACTGTTGGAGAGAGAGTTACTTGTGAGAGACGCGATGAGCGT 1702
Query 1541 GATAGCCTGTGAAGGGT-CTGAGCGGTTTGCAAGGCCCGAGACATACAAGCAATGGC-AG 1598
||| |||| || |||| | ||||||||||| ||||| || || ||||||||||||| ||
Sbjct 1703 GATTTCCTGCGA-GGGTGCAGAGCGGTTTGCGAGGCCTGAAACCTACAAGCAATGGCGAG 1761
Query 1599 GTTAGGATTTTAAGAGCCGGGTTTA-GACCAGCGAAACTAA-A-CAAACAGATCGTAAAG 1655
|||||||||| ||||||||||||| | ||||| || ||| | |||||||||| | |||
Sbjct 1762 -TTAGGATTTTGAGAGCCGGGTTTAAG-CCAGC-AA-CTATTAGCAAACAGATCATGAAG 1817
Query 1656 GACGGGAAAG-AAATAGTGAA-ACAACGTTACCACAAAGATTTCGTGATCGACAACGATA 1713
|| || ||| |||| |||| | |||||||||| | |||||| |||||||| | |||||
Sbjct 1818 GA-GGCTAAGGAAATTGTGAGGA-AACGTTACCATAGAGATTTTGTGATCGATAGCGATA 1875
Query 1714 ACAACTGGATGTTTCAGGGCTGGAAAGGAAGAGTCCTCTATGCTGTTTCCTGCTGGAAAC 1773
|||| |||||| |||| || ||||||||||||||| |||||||| |||| ||||||||||
Sbjct 1876 ACAATTGGATGCTTCAAGGATGGAAAGGAAGAGTCATCTATGCTTTTTCTTGCTGGAAAC 1935
Query 1774 CTGCTAAGAAG 1784
||||| |||||
Sbjct 1936 CTGCTGAGAAG 1946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89557772280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5