BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937372
Length=472
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46613.1 | Symbols: RTFL4, DVL15 | ROTUNDIFOLIA like 4 | chr... 645 0.0
AT5G59510.1 | Symbols: RTFL5, DVL18 | ROTUNDIFOLIA like 5 | chr... 250 9e-66
> AT3G46613.1 | Symbols: RTFL4, DVL15 | ROTUNDIFOLIA like 4 | chr3:17165791-17166225
FORWARD LENGTH=435
Length=435
Score = 645 bits (349), Expect = 0.0
Identities = 407/435 (94%), Gaps = 3/435 (1%)
Strand=Plus/Plus
Query 21 ATGGATGTTGAAAAGCTATGGAATCATACAAAGAAAGATGCCATCTTTCAAACTACTCAT 80
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGATGTTGAAAAGCTATGGAATCATACAAAGAAAGATTCCATCTTTCAAACTACTCAT 60
Query 81 TTCTCTTCTTCTTCTAAACCCTTTTTCACAAGAAGCTTCTCCACAAAAACTTCATCTTCT 140
|||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 61 TTCTCTTCTTCTTCAAAACCTTTTTTCACAAGAAGCTTCTCAACAAAAACTTCATCTTCT 120
Query 141 CCTTCATCCAAATCCCATTTCACTAGAAGCTTCTCAACAAAACCTTCGTCGTCTTCTTGT 200
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 CCATCATCCAAATCCCATTTCACTAGAAGCTTCTCAACAAAACCTTCGTCGTCTTCTAGT 180
Query 201 TCTTCCGAACCCATTTTCAGACGGAGTTTCTCCTCAAAGCCTAAAGCTTCGAAGTCTTTG 260
||||| || | |||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 181 TCTTCAGATCTCATTTTCAGACGGAGTTTCTCCGCAAAGCCTAAAACATCGAAGTCTTTG 240
Query 261 ATTTTGTCTAGAAGCTGTTCCACGAAATCTTCAGCTGATTTCTCCTCCAAGTCTTCT-CT 319
|||||||||||||||||||||||||||| ||||||||||| || |||||||||||| ||
Sbjct 241 CTTTTGTCTAGAAGCTGTTCCACGAAATCCTCAGCTGATTTATCTTCCAAGTCTTCTTCT 300
Query 320 CT--CTAGAAGCTTGTCTCAGAAAGGAGCTTCGGTGACTGGAAAATGCTTCAAAGTCGCC 377
|| |||||| |||||| ||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 301 CTATCTAGAATCTTGTCAAAGAAAGGAGCTTCCGTGACGGGAAAATGCTTCAAAGTAGCG 360
Query 378 AAGGAGCAGAAGTCCCGCTTCTACATAATCAAACGCTGCGTTTTGATGCTCGTTTGCTGG 437
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 AAGGAGCATAAGTCCCGCTTCTACATAATCAAACGCTGTGTTTTGATGCTCGTTTGCTGG 420
Query 438 CACAAACATTCTTGA 452
|||||||||||||||
Sbjct 421 CACAAACATTCTTGA 435
> AT5G59510.1 | Symbols: RTFL5, DVL18 | ROTUNDIFOLIA like 5 | chr5:23990074-23990696
FORWARD LENGTH=623
Length=623
Score = 250 bits (135), Expect = 9e-66
Identities = 358/460 (78%), Gaps = 38/460 (8%)
Strand=Plus/Plus
Query 14 TTGATTCATGGATGTTGAAAAGCTATGGAATCATACAAAGAAAGATGCCATCTTTC-AAA 72
|||||||||||||| |||||| | ||||| | ||||||||| ||||| ||| |||
Sbjct 9 TTGATTCATGGATGATGAAAATTTGTGGAAAGTTGTGAAGAAAGATTCCATC-TTCGAAA 67
Query 73 CTACTCATTTCTCTTCTTCTTCTAAACCCT-TTTTCACAAGAAGCTTCTCCACAAAAACT 131
| ||||| | ||| ||||| ||| ||| |||| ||| |||||||||| |||||||||
Sbjct 68 CGACTCA----T-TTC-TCTTC-AAAACCTGTTTTTACACGAAGCTTCTCAACAAAAACT 120
Query 132 TCATCTTCTCCTTCATCCAAATCCC-ATTTCACTAGAAGCTTCTCAACAAAACCTTCGTC 190
|| |||||| ||||| ||| ||| |||||| ||||| |||||||| ||||| | ||
Sbjct 121 TCTTCTTCTTCTTCA---AAA-CCCGTTTTCACAAGAAGTTTCTCAACTAAACCCACTTC 176
Query 191 GTCTTCTTGTTCTTCCGAACCCAT-TTTCAGACGGAGTTTCTCCT-CAAAGCCTAAAGCT 248
|| ||| ||| || || ||||| ||| ||||||||||||| || |||| || | ||
Sbjct 177 GTATTC---TTCATCAGAGCCCATCTTT-AGACGGAGTTTCT-CTGCAAAACCCACTTCT 231
Query 249 TCGAAGTCTTTGATTT-TGTCTAGAAGCTGTTCCACGAAAT---CT-TCAGCT-GAT-TT 301
||||| ||| | ||| | ||||||||| |||||||||||| || | | | || ||
Sbjct 232 TCGAAATCTCCG-TTTCTATCTAGAAGCGGTTCCACGAAATGCCCTGT-TGATACATCTT 289
Query 302 CT-CCTCCAAGTCTTCTC-TCTCTAGAAGCTTGTCTCAGAAAGGAGCTTCGGTGACTGGA 359
|| | ||||||| ||| | ||||| | ||||||||||||||||||||||||||||| ||
Sbjct 290 CTACTTCCAAGTGTTC-CATCTCTCGGAGCTTGTCTCAGAAAGGAGCTTCGGTGACCCGA 348
Query 360 AAATG-CTTCAA-AGTCGCCAAGGAGCAGAAGTCCCGCTTCTACATAATCAAACGCTGCG 417
|| || | | || | | |||||||| || ||||| || || ||||| || ||||| ||||
Sbjct 349 AAGTGTCGT-AATA-TGGCCAAGGAACACAAGTCTCGGTTTTACATCATGAAACGTTGCG 406
Query 418 TTTTGATGCTCGTTTGCTGGCACAAACATTCTTGAGATTC 457
|| ||||||||||||| |||||||||||| | || |||||
Sbjct 407 TTCTGATGCTCGTTTGTTGGCACAAACATGCCTGTGATTC 446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22454663709
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5