BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937374
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46630.1 | Symbols: | Protein of unknown function (DUF3223)... 937 0.0
> AT3G46630.1 | Symbols: | Protein of unknown function (DUF3223)
| chr3:17180934-17182457 REVERSE LENGTH=939
Length=939
Score = 937 bits (507), Expect = 0.0
Identities = 613/662 (93%), Gaps = 15/662 (2%)
Strand=Plus/Plus
Query 4 CTCCTTGATTGTGGTCGATGACCTCGCTACTTCTCCTCAGAACTCTTCCGCTCCTCCGCA 63
|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 95 CTCCTTGATTGTGGTCGATGACCTCGCTACTTCTTCTCAGAACGCTTCCGCTTCTCCGCA 154
Query 64 ACGGTTTTCTCAACCATCGTCATCAAGTTGGTATCGTAGCTGGTGGAATTCTCAGTCACC 123
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 ACGGATTTCTCAACCATCGTCATCAAGTTGGTATCGTAGCTGGTGGAATTCTCAGTCACC 214
Query 124 GTCGGCGTTTGTGGTGTTCGCTTGCTGATAAACCACAGTTTTACGAG---AATGA----- 175
|||||||||||| |||||| |||||||||| |||||||||||||||| |||||
Sbjct 215 GTCGGCGTTTGTTGTGTTCTCTTGCTGATAGACCACAGTTTTACGAGAATAATGATTCTG 274
Query 176 -TTCTACGGCGGAGGGATCC-G-GC-GCGGCGATGAACGCGACGTCGCCTGTTGGTGATA 231
|||| ||| |||||||||| | || ||||||||||||| ||| |||||||||| |||||
Sbjct 275 TTTCTCCGGTGGAGGGATCCGGCGCGGCGGCGATGAACGTGACATCGCCTGTTGTTGATA 334
Query 232 ATAGCTGGCGTTTTGAAGATCCTGATTATCGGAAATGGAAGAATCTAGAGGCTGAGATTC 291
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 ATAGCTGGCGTTATGAAGATCCTGATTATCGGAAATGGAAGAATCTAGAGGCTGAGATTC 394
Query 292 TTCGTGATATTGAACCTATTTCTCTTCTCGCTAAAGAAATTCTTCATTCGGATAGGTATT 351
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 395 TTCGAGATATTGAACCTATTTCTCTTCTCGCTAAAGAAATTCTTCATTCCGATAGGTATT 454
Query 352 TGGATGGAGAACGCTTAGAATTTGAGGATGAGAAAATTGTCATGGAAAAGCTTCTTGCGT 411
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 455 TGGATGGAGAACGCTTAGATTTTGAGGATGAGAAAATTGTCATGGAAAAGCTTCTTCCTT 514
Query 412 ATCACCCGTACTCCAAAGATAAAATTGGCTGCGGTCTCGATTTTATAATGGTTGATCGGC 471
||||||| || |||||||| |||||||| || ||||| ||||||||||||||||||||||
Sbjct 515 ATCACCCATATTCCAAAGACAAAATTGGTTGTGGTCTTGATTTTATAATGGTTGATCGGC 574
Query 472 ATCCTCAATTCAGGCACTCAAGGTGCCTCTTTGTTGTGAGAACGGACGGTGGATGGATAG 531
|||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 575 ATCCACAATTCAGGCACTCAAGATGCCTCTTTGTTGTGAGAACAGATGGTGGATGGATAG 634
Query 532 ATTTCTCCTACCAGAAA-TGTCTTCGAGCTTATGTCCGAGATAAGTACCCGTCTCACGCT 590
||||||| ||||| ||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 635 ATTTCTCGTACCA-AAAGTGTCTTCGAGCCTATGTTCGAGATAAGTACCCGTCTCACGCT 693
Query 591 GAGAGATTTATTCGTGAACATTTTAAGCGTGCTAGTAGCTAAAAAATCTGTATAATTGCC 650
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 694 GAGAGGTTTATTCGTGAACATTTTAAGCGTGCTAGTAGCTAAAAA-TCTGTATAACTGTC 752
Query 651 CC 652
||
Sbjct 753 CC 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31496810169
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5