BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937378

Length=697
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51460.1 | Symbols:  | ABC-2 type transporter family protein...   431    5e-120


> AT1G51460.1 | Symbols:  | ABC-2 type transporter family protein 
| chr1:19076982-19081433 REVERSE LENGTH=2285
Length=2285

 Score =  431 bits (233),  Expect = 5e-120
 Identities = 273/293 (93%), Gaps = 0/293 (0%)
 Strand=Plus/Plus

Query  402   GATTCTTCTTTCTCTCTTCACCAACTACATGAAACTTCGAACACATTGGATCCTCTAGAT  461
             ||||| |||||||||||||||||||||||||||||| | |||||||| |||||||| |||
Sbjct  951   GATTCATCTTTCTCTCTTCACCAACTACATGAAACTACAAACACATTAGATCCTCTGGAT  1010

Query  462   GATATACCAACAGCAGAAATTAGAACAACTCTTGTCAGAAAATTCAAGTGTTCAGTATAT  521
             ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| | |||
Sbjct  1011  GATATACCAACTGCAGAAATTAGAACAACACTTGTCAGAAAATTTAAGTGTTCACTTTAT  1070

Query  522   GCAGCAGCTTCAAAAGCAAGAATTCAAGAAATAACATTGATAGAGGGGCTTGTCACAGAA  581
             ||||||||||||| ||||||||||||||||||| ||| ||||| |||| |||||||||||
Sbjct  1071  GCAGCAGCTTCAAGAGCAAGAATTCAAGAAATAGCATCGATAGTGGGGATTGTCACAGAA  1130

Query  582   AGGAAAATGGGAAGCCAAACAAATTGGTGGAAACAACTCAGAATACTTACTCAGCGATCT  641
             ||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1131  AGGAAAAAGGGGAGCCAAACTAATTGGTGGAAACAACTCAGAATACTTACTCAGCGATCT  1190

Query  642   TTAATCAACATGAGTAGAGACTTGGGGTACTACTGAATGCGGATTGCAGTCTA  694
             || |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  1191  TTCATCAACATGAGTAGAGACTTGGGGTACTACTGGATGCGGATTGCAGTCTA  1243


 Score =  255 bits (138),  Expect = 3e-67
 Identities = 147/151 (97%), Gaps = 1/151 (1%)
 Strand=Plus/Plus

Query  111  CTTACCAGAGAAGAGATCAGTGACATTGCGGAAGCTACAATCACTGACATGGGTCTTGAA  170
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  456  CTTACCAGAGAAGAGATCAGTGACATTGTGGAAGCTACAATCACTGACATGGGTCTTGAA  515

Query  171  GAATGTTCAGACAGGACCATTGGAAACTGGCATTTGCGTGGAATAAGCGGAGGAGAGAAG  230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  516  GAATGTTCAGACAGGACCATTGGAAACTGGCATTTGCGTGGAATAAGCGGAGGAGAGAAG  575

Query  231  AAACGGCTCAGTATTGCCCTCGAGATTCTTA  261
            |||||||| ||||||||||||||| | ||||
Sbjct  576  AAACGGCTTAGTATTGCCCTCGAGGT-CTTA  605


 Score =  222 bits (120),  Expect = 3e-57
 Identities = 139/148 (94%), Gaps = 2/148 (1%)
 Strand=Plus/Plus

Query  253  AGATTCTTAGAAACATAGCAAGCAGTGGCAAAACTGTGATTTCTTTAATCCATCAGCCGA  312
            |||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||
Sbjct  679  AGATTCTTAGAAACATAGCAAGCAGTGGCAAAACTGTGGTTTCTTCGATCCATCAGCCGA  738

Query  313  GTGGTGAGGTTTTCGCCCTCTTTGATGACATGCTACTTCTGGT-TGGAGGAGAAACCGTT  371
            ||||||||||||||||||||||||||||| ||||||||||| | |||||||||||| |||
Sbjct  739  GTGGTGAGGTTTTCGCCCTCTTTGATGACCTGCTACTTCTG-TCTGGAGGAGAAACTGTT  797

Query  372  TACTTTGGCCAAGCAGAATCTTCAACAA  399
            ||||||||| ||||||||||| ||||||
Sbjct  798  TACTTTGGCGAAGCAGAATCTGCAACAA  825



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33757346784


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5