BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937406

Length=1160
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G46840.1 | Symbols:  | Subtilase family protein | chr3:17251...   499    2e-140


> AT3G46840.1 | Symbols:  | Subtilase family protein | chr3:17251011-17254113 
FORWARD LENGTH=2217
Length=2217

 Score =  499 bits (270),  Expect = 2e-140
 Identities = 389/445 (87%), Gaps = 14/445 (3%)
 Strand=Plus/Plus

Query  28    GTTTGCCATTCGAGGAGGACCCGATCGCCATCGGGGCTTTCCATGTCATGGCCAAGGGAA  87
             ||| ||| || ||||||||||| ||||| |||||||||||||||| ||||||||||||||
Sbjct  845   GTTCGCCTTTTGAGGAGGACCCTATCGCGATCGGGGCTTTCCATGCCATGGCCAAGGGAA  904

Query  88    TCCTCATAGTGAATTCCGCAGGAAACAGTGGTCCACAACCTAGCACCGTCTCTAGCACTT  147
             ||||||||||||||||||||||||||||||||||| |||||||||| ||| | || | ||
Sbjct  905   TCCTCATAGTGAATTCCGCAGGAAACAGTGGTCCAGAACCTAGCACGGTCGCGAGTA-TT  963

Query  148   -CTCCGTGGATCTTCACTATCGCTGCTAGTAATACAAACCGGGCGTTTGTCACCAAAGTT  206
              | |||||||| |||||| | |||||||||||||| ||||| ||||||||||| ||||||
Sbjct  964   GCGCCGTGGATGTTCACTGTTGCTGCTAGTAATACTAACCGTGCGTTTGTCACTAAAGTT  1023

Query  207   GTTCTCGGAGATGGCAAGACAATTGTCGGAAGATCGGTAAATT--TTC-ATCTGAACGGA  263
             ||||||||| | ||||||||| |||  | ||||||||||||||  ||| |||| ||||||
Sbjct  1024  GTTCTCGGAAACGGCAAGACAGTTG--G-AAGATCGGTAAATTCGTTCGATCTTAACGGA  1080

Query  264   ATA-AAGTATCCTCTAGTATACGGAGGA-TC-GTCTTCAAGTAGGTGCGATGCTGCTTCC  320
             | | ||||| |||||||||||||| | | || | |||||||||| || | ||||||||||
Sbjct  1081  A-AGAAGTACCCTCTAGTATACGG-GAAATCAG-CTTCAAGTAGTTGTGGTGCTGCTTCC  1137

Query  321   ACCGGGTTTTGCTCACCAGGGTGTTTAGACAGTAAACGTGTAAAAGGAAAGATTGTGTTA  380
              ||||||||||||||||||||||  |||| ||||||||||| |||||||||||||| |||
Sbjct  1138  GCCGGGTTTTGCTCACCAGGGTGCCTAGATAGTAAACGTGTGAAAGGAAAGATTGTTTTA  1197

Query  381   TGCGATTCCCCGCAAAATCCCAAAGAAGCTCAAGTTATGGGAGCCATCGCATCCATTGTT  440
             || |||||||||||||||||| | |||||||||| |||||||||||| ||||| ||||||
Sbjct  1198  TGTGATTCCCCGCAAAATCCCGATGAAGCTCAAGCTATGGGAGCCATTGCATCTATTGTT  1257

Query  441   AGGAGCCGCCATGCAGACGTGGCAA  465
             ||||||| || | ||||||||||||
Sbjct  1258  AGGAGCCACCGTACAGACGTGGCAA  1282



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 56927418030


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5