BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937412

Length=1377
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G47130.1 | Symbols:  | F-box associated ubiquitination effec...   126    5e-28


> AT3G47130.1 | Symbols:  | F-box associated ubiquitination effector 
family protein | chr3:17353714-17354851 FORWARD LENGTH=1083
Length=1083

 Score =  126 bits (68),  Expect = 5e-28
 Identities = 120/144 (83%), Gaps = 7/144 (5%)
 Strand=Plus/Plus

Query  878   ATGCTGAGAAAGAAGAATGGTCCATG-ACTACTTTTCATTTGCCCCAATCTGCTGCTGGC  936
             ||||||||||||| |||||||| ||| || |||||| |||||||||||||||||||||||
Sbjct  929   ATGCTGAGAAAGAGGAATGGTCTATGAAC-ACTTTTTATTTGCCCCAATCTGCTGCTGGC  987

Query  937   CTTGACTACGACATTATCGG-TACCTTTAATACCTTCGACATTTGTCTGCTTCCAAAACG  995
             ||||||| | |||| || || ||||||| |||||  ||| ||||||| | |||| ||| |
Sbjct  988   CTTGACTTCAACATCAT-GGATACCTTTTATACCGGCGAGATTTGTCAGGTTCCGAAA-G  1045

Query  996   ATTTTTT-GATCCGTTTT-GTCTA  1017
             | || |  ||||| |||| |||||
Sbjct  1046  AATTGTCAGATCCTTTTTCGTCTA  1069



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 67820936295


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5