BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937413 Length=1018 Score E Sequences producing significant alignments: (Bits) Value AT3G47130.1 | Symbols: | F-box associated ubiquitination effec... 399 2e-110 AT3G47150.1 | Symbols: | F-box and associated interaction doma... 226 3e-58 > AT3G47130.1 | Symbols: | F-box associated ubiquitination effector family protein | chr3:17353714-17354851 FORWARD LENGTH=1083 Length=1083 Score = 399 bits (216), Expect = 2e-110 Identities = 534/680 (79%), Gaps = 52/680 (8%) Strand=Plus/Plus Query 238 TAAGTAGATTAAGTGTGGGGATTTGTAACCCTAGCACAAGGCAGCTGCA-TATTTATCCA 296 |||||||| ||||| ||||||||||||||||||||||||||||||| || | ||| ||| Sbjct 395 TAAGTAGACTAAGTATGGGGATTTGTAACCCTAGCACAAGGCAGCTTCAGT-TTTTTCCC 453 Query 297 CAAATCAAATTCGAAA-AGGATCCATGTAC-TGATCCCTGGATC-ATGTACTTTT-TTGG 352 ||| |||| | | ||| | |||||| || | | | || | || || |||| |||| Sbjct 454 CAACTCAAGTAC-AAAGAAGATCCA-AAACTTTTTACATGCCCCAAT-TA-TTTTGTTGG 509 Query 353 GTATGATCCTGTTGAAGATCAATACAAAGTTCTAGCCATTCATC-ATTTGAGATGGAGAT 411 ||| ||| || ||||||||||||||||||| || || ||| ||| ||| | | |||| Sbjct 510 GTACGATTCTATTGAAGATCAATACAAAGTGCTCGCAATTGATCGTTTTCA-TTTGAGAA 568 Query 412 TTGAGCACAAGGTTTTGGTAGTGGG-AG-G-AG--G-TTGGAGAGACGCTCCATATCCCA 465 | ||||||||| || || || |||| || | || | ||||||||| ||||||| | Sbjct 569 TGGAGCACAAGATTCTGTTATTGGGAAGAGAAGAAGCTTGGAGAGAGGCTCCATGTGTTG 628 Query 466 CCTGTCCTCATGTTGT-TCGGACCTTGGGGCTGTATATGAACGGAACCCTATACTACGGG 524 | |||||||||||| | || |||| |||||| ||||||||||| ||||| ||||||||| Sbjct 629 CATGTCCTCATGTT-TCTCATACCTCGGGGCTCTATATGAACGGTACCCTGTACTACGGG 687 Query 525 GCTTCTAGGATGGAAATCAAGTCCC-CGAATAATAATTCTATAATTGTGAGTTTCGATGT 583 || ||||||| ||| ||| | |||| |||||| |||||| ||||||||||||||||||| Sbjct 688 GCGTCTAGGACGGATATCGA-TCCCTGGAATAACAATTCTGTAATTGTGAGTTTCGATGT 746 Query 584 TAGGTTTGAAACGTTC--AA-CATC-A--T--CAA-C---G---TACCAGCGGGTTATGA 628 |||| ||||||||||| || |||| | | ||| | | ||||| ||||||||| Sbjct 747 TAGGCTTGAAACGTTCAAAATCATCAATGTACCAAGCAAAGTTCTACCAATGGGTTATGA 806 Query 629 GAAGATGTGGAATTG-T-TCA--T--CTGAA----GCGGATAAAACTTTGATCAACTATA 678 || |||||| ||| | | | ||| | ||||||||| |||||||||| | Sbjct 807 AAATATGTGG-CTTGCTGAGAGGTGGAGGAATCTTACAGATAAAACTCTGATCAACTACA 865 Query 679 GAGGGAAAATTGGTGTGGTTGAGCACCCTCGTGATGGTAGTTTTCGAATGTGGGTTGTGG 738 ||| ||||| |||||||||||| | ||||| | ||||||||||||||||||||||||| Sbjct 866 AAGGAAAAATCGGTGTGGTTGAGAATGCTCGTCAAGGTAGTTTTCGAATGTGGGTTGTGG 925 Query 739 AAGATGCTGAGAAAGAG-AATTGGTCCATGACCACTTTTCATTTGCCCCAATCTGCTGCT 797 ||||||||||||||||| ||| |||| |||| ||||||| |||||||||||||||||||| Sbjct 926 AAGATGCTGAGAAAGAGGAAT-GGTCTATGAACACTTTTTATTTGCCCCAATCTGCTGCT 984 Query 798 GGTCTTGACTTTGAGGTCATGGAAACCGTTTATAACGGTGAGATTTGTCTAC-TTCCAAA 856 || |||||||| | ||||||| ||| |||||| ||| |||||||||| | |||| || Sbjct 985 GGCCTTGACTTCAACATCATGGATACCTTTTATACCGGCGAGATTTGTC-AGGTTCCGAA 1043 Query 857 AGAATTGCCCGATCCGTTTT 876 ||||||| | ||||| |||| Sbjct 1044 AGAATTGTCAGATCCTTTTT 1063 Score = 86.1 bits (46), Expect = 6e-16 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 171 ATTACATCTTCCTCAGCTGCTCCTCGTCTTCTCATTGCTTTTCAGGACTTTC 222 |||||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 190 ATTACATCTTCCTCAGCTCCTCCACGTCTTCTCATTGCTTTTCAGGACTTTC 241 > AT3G47150.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:17358591-17359765 FORWARD LENGTH=1083 Length=1083 Score = 226 bits (122), Expect = 3e-58 Identities = 168/190 (88%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 32 GATTGACATTCCTCTTGATCTCCAGATTAATACACTCTTAAGATTACCTGTAAAGCCTTT 91 |||| |||||||||| || ||||||||||||| |||||||||||||||||| ||| |||| Sbjct 27 GATTTACATTCCTCTCGACCTCCAGATTAATATACTCTTAAGATTACCTGTCAAGTCTTT 86 Query 92 ATTGAGATTTCGATGCGTCTCCAAGCTTTGGTCCTCAATCATCACTAGCCAATATTTTCA 151 ||||||||||||||| |||||||||||||||| || || ||||| ||||| |||||| Sbjct 87 ATTGAGATTTCGATGTGTCTCCAAGCTTTGGTGTTCTATTATCACCAGCCACGATTTTCG 146 Query 152 AAACCGTCACTTTATTATTATTACATCTTCCTCAGCTGCTCCTCGTCTTCTCATTGCTTT 211 |||||||||||||| | ||| || ||||| |||||| |||||||||||||||||||||| Sbjct 147 AAACCGTCACTTTA--A-TATCACTTCTTCTTCAGCTCCTCCTCGTCTTCTCATTGCTTT 203 Query 212 TCAGGACTTT 221 |||||||||| Sbjct 204 TCAGGACTTT 213 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49882507971 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5