BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937413
Length=1018
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47130.1 | Symbols: | F-box associated ubiquitination effec... 399 2e-110
AT3G47150.1 | Symbols: | F-box and associated interaction doma... 226 3e-58
> AT3G47130.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:17353714-17354851 FORWARD LENGTH=1083
Length=1083
Score = 399 bits (216), Expect = 2e-110
Identities = 534/680 (79%), Gaps = 52/680 (8%)
Strand=Plus/Plus
Query 238 TAAGTAGATTAAGTGTGGGGATTTGTAACCCTAGCACAAGGCAGCTGCA-TATTTATCCA 296
|||||||| ||||| ||||||||||||||||||||||||||||||| || | ||| |||
Sbjct 395 TAAGTAGACTAAGTATGGGGATTTGTAACCCTAGCACAAGGCAGCTTCAGT-TTTTTCCC 453
Query 297 CAAATCAAATTCGAAA-AGGATCCATGTAC-TGATCCCTGGATC-ATGTACTTTT-TTGG 352
||| |||| | | ||| | |||||| || | | | || | || || |||| ||||
Sbjct 454 CAACTCAAGTAC-AAAGAAGATCCA-AAACTTTTTACATGCCCCAAT-TA-TTTTGTTGG 509
Query 353 GTATGATCCTGTTGAAGATCAATACAAAGTTCTAGCCATTCATC-ATTTGAGATGGAGAT 411
||| ||| || ||||||||||||||||||| || || ||| ||| ||| | | ||||
Sbjct 510 GTACGATTCTATTGAAGATCAATACAAAGTGCTCGCAATTGATCGTTTTCA-TTTGAGAA 568
Query 412 TTGAGCACAAGGTTTTGGTAGTGGG-AG-G-AG--G-TTGGAGAGACGCTCCATATCCCA 465
| ||||||||| || || || |||| || | || | ||||||||| ||||||| |
Sbjct 569 TGGAGCACAAGATTCTGTTATTGGGAAGAGAAGAAGCTTGGAGAGAGGCTCCATGTGTTG 628
Query 466 CCTGTCCTCATGTTGT-TCGGACCTTGGGGCTGTATATGAACGGAACCCTATACTACGGG 524
| |||||||||||| | || |||| |||||| ||||||||||| ||||| |||||||||
Sbjct 629 CATGTCCTCATGTT-TCTCATACCTCGGGGCTCTATATGAACGGTACCCTGTACTACGGG 687
Query 525 GCTTCTAGGATGGAAATCAAGTCCC-CGAATAATAATTCTATAATTGTGAGTTTCGATGT 583
|| ||||||| ||| ||| | |||| |||||| |||||| |||||||||||||||||||
Sbjct 688 GCGTCTAGGACGGATATCGA-TCCCTGGAATAACAATTCTGTAATTGTGAGTTTCGATGT 746
Query 584 TAGGTTTGAAACGTTC--AA-CATC-A--T--CAA-C---G---TACCAGCGGGTTATGA 628
|||| ||||||||||| || |||| | | ||| | | ||||| |||||||||
Sbjct 747 TAGGCTTGAAACGTTCAAAATCATCAATGTACCAAGCAAAGTTCTACCAATGGGTTATGA 806
Query 629 GAAGATGTGGAATTG-T-TCA--T--CTGAA----GCGGATAAAACTTTGATCAACTATA 678
|| |||||| ||| | | | ||| | ||||||||| |||||||||| |
Sbjct 807 AAATATGTGG-CTTGCTGAGAGGTGGAGGAATCTTACAGATAAAACTCTGATCAACTACA 865
Query 679 GAGGGAAAATTGGTGTGGTTGAGCACCCTCGTGATGGTAGTTTTCGAATGTGGGTTGTGG 738
||| ||||| |||||||||||| | ||||| | |||||||||||||||||||||||||
Sbjct 866 AAGGAAAAATCGGTGTGGTTGAGAATGCTCGTCAAGGTAGTTTTCGAATGTGGGTTGTGG 925
Query 739 AAGATGCTGAGAAAGAG-AATTGGTCCATGACCACTTTTCATTTGCCCCAATCTGCTGCT 797
||||||||||||||||| ||| |||| |||| ||||||| ||||||||||||||||||||
Sbjct 926 AAGATGCTGAGAAAGAGGAAT-GGTCTATGAACACTTTTTATTTGCCCCAATCTGCTGCT 984
Query 798 GGTCTTGACTTTGAGGTCATGGAAACCGTTTATAACGGTGAGATTTGTCTAC-TTCCAAA 856
|| |||||||| | ||||||| ||| |||||| ||| |||||||||| | |||| ||
Sbjct 985 GGCCTTGACTTCAACATCATGGATACCTTTTATACCGGCGAGATTTGTC-AGGTTCCGAA 1043
Query 857 AGAATTGCCCGATCCGTTTT 876
||||||| | ||||| ||||
Sbjct 1044 AGAATTGTCAGATCCTTTTT 1063
Score = 86.1 bits (46), Expect = 6e-16
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 171 ATTACATCTTCCTCAGCTGCTCCTCGTCTTCTCATTGCTTTTCAGGACTTTC 222
|||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 190 ATTACATCTTCCTCAGCTCCTCCACGTCTTCTCATTGCTTTTCAGGACTTTC 241
> AT3G47150.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:17358591-17359765 FORWARD LENGTH=1083
Length=1083
Score = 226 bits (122), Expect = 3e-58
Identities = 168/190 (88%), Gaps = 3/190 (2%)
Strand=Plus/Plus
Query 32 GATTGACATTCCTCTTGATCTCCAGATTAATACACTCTTAAGATTACCTGTAAAGCCTTT 91
|||| |||||||||| || ||||||||||||| |||||||||||||||||| ||| ||||
Sbjct 27 GATTTACATTCCTCTCGACCTCCAGATTAATATACTCTTAAGATTACCTGTCAAGTCTTT 86
Query 92 ATTGAGATTTCGATGCGTCTCCAAGCTTTGGTCCTCAATCATCACTAGCCAATATTTTCA 151
||||||||||||||| |||||||||||||||| || || ||||| ||||| ||||||
Sbjct 87 ATTGAGATTTCGATGTGTCTCCAAGCTTTGGTGTTCTATTATCACCAGCCACGATTTTCG 146
Query 152 AAACCGTCACTTTATTATTATTACATCTTCCTCAGCTGCTCCTCGTCTTCTCATTGCTTT 211
|||||||||||||| | ||| || ||||| |||||| ||||||||||||||||||||||
Sbjct 147 AAACCGTCACTTTA--A-TATCACTTCTTCTTCAGCTCCTCCTCGTCTTCTCATTGCTTT 203
Query 212 TCAGGACTTT 221
||||||||||
Sbjct 204 TCAGGACTTT 213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49882507971
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5