BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937424

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03330.1 | Symbols:  | Cysteine proteinases superfamily prot...   113    1e-24


> AT5G03330.1 | Symbols:  | Cysteine proteinases superfamily protein 
| chr5:806964-809779 FORWARD LENGTH=1537
Length=1537

 Score =  113 bits (61),  Expect = 1e-24
 Identities = 193/254 (76%), Gaps = 19/254 (7%)
 Strand=Plus/Plus

Query  139   AATTGCCAGTTCCGTGCTTTAGCTGATCAATTTTATCAAA-CCTCGGATTGTCATAAACG  197
             |||||||||||||||||||||||||||||| | || |||| || | ||| | ||||||| 
Sbjct  962   AATTGCCAGTTCCGTGCTTTAGCTGATCAACTGTA-CAAAACCGCAGATCGCCATAAACA  1020

Query  198   TGTTAGACAAGAAATCGTAAAACAGCTTAAATCTCATCCAAAGATT-T-A-CAAAGGGTT  254
             |||| ||| | |||| ||||||||||| ||||||| ||||  |||| | | ||| || | 
Sbjct  1021  TGTTCGACGACAAATAGTAAAACAGCTAAAATCTCGTCCA--GATTCTTATCAA-GGATA  1077

Query  255   TGTGAATAATATGGACTTCTCCCAGTATGTAAAGAAT-ATGTCCACTAA-CTCCGAATGG  312
              ||   |  ||||||||||||  | ||| ||| |||  |||||  |  | |  |||||||
Sbjct  1078  CGT---TCCTATGGACTTCTCTGATTATCTAA-GAAAGATGTCT-CGGAGCGGCGAATGG  1132

Query  313   GGCGATGAAGTCACATTGAGAGTC-GTTGCTGATGTGTAT-GGAGTCAAAATAGTACTCA  370
             |||||| | || ||||| | || | | ||| |||| |||| || || ||||||||| || 
Sbjct  1133  GGCGATCATGTGACATT-ACAGGCAGCTGCAGATGCGTATCGG-GTGAAAATAGTAGTCC  1190

Query  371   TTACATCAATCAAA  384
             | |||||  |||||
Sbjct  1191  TAACATCGTTCAAA  1204



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24865902765


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5