BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937425
Length=326
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39340.1 | Symbols: | SAC3/GANP/Nin1/mts3/eIF-3 p25 family ... 409 1e-113
> AT2G39340.1 | Symbols: | SAC3/GANP/Nin1/mts3/eIF-3 p25 family
| chr2:16423639-16430108 FORWARD LENGTH=3642
Length=3642
Score = 409 bits (221), Expect = 1e-113
Identities = 265/286 (93%), Gaps = 3/286 (1%)
Strand=Plus/Plus
Query 13 AGAATCAATATGGTGTTGATGGAAGCCAAGCGA-ATAAATATTCATATCAATACTCAACT 71
|||||| |||||||||||||||||||||| | | | ||||||||||||||||||||||||
Sbjct 340 AGAATCGATATGGTGTTGATGGAAGCCAAAC-ACAGAAATATTCATATCAATACTCAACT 398
Query 72 GGGTCTGACAGTGCCCCATGGAAAGCACATTCTTGTTGAAAATCAGGCTGTGGAGAATGG 131
|||||||| ||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 399 GGGTCTGAAAGTGCCCCATGGACAGGGCATTC-TGTTGAAAATCAGGCTGTGGAGAATGG 457
Query 132 GAACTATTCAAATTCAAACTATTACCATCCACAGCCCATAGGGCCAGCCACAGGCAATGT 191
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 458 GAACTATTCAAATTCAAACTATTACCATCCACAGCCGACAGGGCCAGCCACAGGCAATGT 517
Query 192 GCAAGAAATACCGAATACCGCATCCTTCACTAGCTCATCAACGTCTGGAACTGCAAATGC 251
|||||| ||||||||||| | ||||||||||| |||||| ||||| |||||||||||||
Sbjct 518 GCAAGAGATACCGAATACTGTATCCTTCACTATCTCATCGACGTCCGGAACTGCAAATGT 577
Query 252 GGCACAAGATTACAGTGGATATACGCCATACCAGACATCTTCTGAC 297
|||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 578 GGCACAAGATTATAGTGGATATACGCCATACCAGACCTCTTCTGAC 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15180860198
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5