BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937435
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46940.1 | Symbols: DUT1 | DUTP-PYROPHOSPHATASE-LIKE 1 | chr... 837 0.0
> AT3G46940.1 | Symbols: DUT1 | DUTP-PYROPHOSPHATASE-LIKE 1 | chr3:17288194-17288952
REVERSE LENGTH=759
Length=759
Score = 837 bits (453), Expect = 0.0
Identities = 493/513 (96%), Gaps = 0/513 (0%)
Strand=Plus/Plus
Query 67 CGTCAACGAACCATCACCTAAACTCCAAAAGCTCGATCAAAACGGAATCCATGGCGATTC 126
||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 94 CGTAAACGAACCATCACCTAAACTCCAAAAGCTCGACCGAAACGGAATCCATGGCGATTC 153
Query 127 ATCATCATCACCATTCTTCAAAGTGAAGAAACTCTCCGAGAAAGCTGTTTTACCAACAAG 186
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 154 ATCACCATCACCATTCTTCAAAGTGAAGAAACTCTCCGAGAAAGCTGTTATACCAACACG 213
Query 187 AGGCTCATCACTCTCCGCTGGATACGATCTCTCAAGTGCGGTGGATTCAAAAGTTCCAGC 246
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 CGGCTCACCACTCTCCGCTGGATACGATCTCTCAAGTGCGGTGGATTCAAAAGTTCCAGC 273
Query 247 GAGAGGTAAAGCTCTTATCCCAACGGATCTAAGTATCGCTGTTCCCGAAGGAACTTACGC 306
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 GAGAGGTAAAGCGCTTATCCCAACGGATCTAAGTATCGCTGTTCCCGAAGGAACTTACGC 333
Query 307 GAGGATTGCGCCGAGATCGGGTTTGGCTTGGAAACATTCGATTGATGTTGGTGCTGGTGT 366
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 334 GAGAATTGCGCCGAGATCTGGTTTGGCTTGGAAACATTCGATTGATGTTGGTGCTGGTGT 393
Query 367 GATTGATGCTGATTACAGAGGACCTGTTGGTGTGATTTTGTTTAATCATTCTGATTTTGA 426
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 394 GATTGATGCTGATTATAGAGGACCTGTTGGTGTGATTTTGTTTAATCATTCTGATGCTGA 453
Query 427 TTTTGAGGTTAAGTTCGGAGATCGAATCGCGCAATTGATTATCGAGAAGATTGTGACTCC 486
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 454 TTTTGAGGTTAAGTTCGGTGATCGAATCGCGCAGTTGATTATCGAGAAGATTGTGACTCC 513
Query 487 TGATGTTGTTGAGGTTGAGGATTTGGATGATACTGTTCGTGGTGATGGTGGTTTTGGTTC 546
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 514 TGATGTTGTTGAGGTTGATGATTTGGATGAGACTGTTCGTGGTGATGGTGGTTTTGGTTC 573
Query 547 TACTGGTGTCTGAGTGATGATCATCTTCTTCGT 579
||||||||||| |||||| ||||||||||||||
Sbjct 574 TACTGGTGTCTAAGTGATAATCATCTTCTTCGT 606
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5