BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937443
Length=1223
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47020.1 | Symbols: | F-box and associated interaction doma... 339 5e-92
AT3G47030.1 | Symbols: | F-box and associated interaction doma... 176 4e-43
AT2G16450.1 | Symbols: | F-box and associated interaction doma... 67.6 3e-10
> AT3G47020.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:17319862-17321077 FORWARD LENGTH=942
Length=942
Score = 339 bits (183), Expect = 5e-92
Identities = 328/394 (83%), Gaps = 26/394 (7%)
Strand=Plus/Plus
Query 813 AATTGCAAAGGTAAATTGGGCGTACTATGGTCA-TCGCCCT-TTG-G-TCTTACTCATGA 868
||||||||||||||||| ||| |||||||| || | ||||| | | | || | ||||||
Sbjct 565 AATTGCAAAGGTAAATTAGGCATACTATGGCCAGT-GCCCTCTGGAGATCAGAGTCATGA 623
Query 869 ACTCACAA-AATATTTTGTGTTGTGGATTCTCGAAGATGCCAATGAATTGAGATGGTCGA 927
| |||||| || |||||||||| ||||||| |||||||||||| || ||| ||||||||
Sbjct 624 AGTCACAAGAA-GTTTTGTGTTGCGGATTCTGGAAGATGCCAATAAACTGATATGGTCGA 682
Query 928 AGACTACCTACACATTGCCGTCTT-ATTGGAAGAATCTAGTTGCGAATAACTCTCTATAC 986
|||| |||||||||| | | || |||||||||| | ||| |||||| |||||||||
Sbjct 683 GGACTGTCTACACATTGTC-TTTTAATTGGAAGAA---ACTTGTGAATAAATCTCTATAC 738
Query 987 ATTGTCGGGATGACTAGTGCAGGTGAAATTGTGTTATCGACATGCTATCTAAAGATTCTA 1046
||||| ||||||||||||| |||||||||||||||||| ||| || | | ||||
Sbjct 739 ATTGTTGGGATGACTAGTGGAGGTGAAATTGTGTTATCTACACGC---C-----A-TCTA 789
Query 1047 AACTATCCTTTCTACATTGTCTACTACAATGTAGTGAAAAAGACTGCAGG-AAAAATTGA 1105
|||||||||||||||||||||||||| ||| ||||| || ||||| || ||||| |||
Sbjct 790 AACTATCCTTTCTACATTGTCTACTATAATCCGGTGAACAACACTGC-GGCAAAAAATGA 848
Query 1106 AATCCAGTTTGGGAATATAGCTAAGA-G--GGCTAAAAACTCAAGGATCTATACATTTAT 1162
|||||||||||||||||| ||||| | | |||| ||||||||||||| ||||| |||||
Sbjct 849 AATCCAGTTTGGGAATATCGCTAATAAGAAGGCTGAAAACTCAAGGATTTATACGTTTAT 908
Query 1163 TGACCATGTAGAGAATGTAGAGCGTATGGATTAA 1196
|||||||||||||||||||||| ||||||||||
Sbjct 909 AGACCATGTAGAGAATGTAGAGCATATGGATTAA 942
Score = 222 bits (120), Expect = 5e-57
Identities = 280/351 (80%), Gaps = 35/351 (10%)
Strand=Plus/Plus
Query 362 TTCCTATGACTATGAGATTCATGCCCCTGTACGAGGGTTTCTTTGTAGCAAATCTAGTAA 421
|||||||||| |||||||||||||||||||||| |||||||||||||||||| | | |
Sbjct 249 TTCCTATGACAATGAGATTCATGCCCCTGTACGTGGGTTTCTTTGTAGCAAAGC---T-A 304
Query 422 GCCGATGATCTATAACCCTAGCACAGGAGA--GTGCAAAACTTTACCCAGAGCGATGACA 479
| || |||||||||||||||||||||| ||||| | | ||||| ||||| | |
Sbjct 305 ---G-TG-TCTATAACCCTAGCACAGGAGAGTGTGCATACCCTTACCTAGAGC--T-TC- 355
Query 480 AAGAGGACTGAGATGAAAACCTATT-T-TGGGTATGATCCTATTGACAAACTATTC-AAG 536
|| || || || | | ||| | ||| ||| | ||| || || | | |||
Sbjct 356 TAG-GG-CT---TTG-GGA-C-ATTCTCCCCGTA-GATGC---TGAGAATCT-TGCAAAG 402
Query 537 -GTGTTGTGTGTGTCCAAGGTATTGTTGGCGTCCGAGGATTTTGCATGTCGAGTTTCAAC 595
| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 AAAG-TGTGCGTGCCCAAGGTATTGTTGGCGTCCGAGGATTTTGCATGTCGAGTTTCAAC 461
Query 596 ATTAGGAACAGGT-GAAGTGTACTGGAGAATGATCGAATGTTCGATACCCCATAGGCCTT 654
||||||||| || ||||| | ||||||||||||| |||| ||| |||||||||||||||
Sbjct 462 ATTAGGAAC-GGAAGAAGTTTGCTGGAGAATGATCCAATGCTCGCTACCCCATAGGCCTT 520
Query 655 TACGTGGTGAGATATGCATCGATGGAGTTTTGTATTATGTAGCTGAGTGCA 705
| |||| |||||||||||| |||||||||||||| ||| ||||| | ||||
Sbjct 521 TTCGTGATGAGATATGCATTGATGGAGTTTTGTACTATTTAGCTAATTGCA 571
> AT3G47030.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:17322119-17323545 FORWARD LENGTH=1427
Length=1427
Score = 176 bits (95), Expect = 4e-43
Identities = 380/509 (75%), Gaps = 53/509 (10%)
Strand=Plus/Plus
Query 551 CAAGGTATTGTTGGCGTCCGAGGATTTTGCATGTCGAGTTTCAACATTAGGAACAGGTGA 610
||||||||||| |||||| ||||||| ||||||||||||||||||||||| | ||
Sbjct 622 CAAGGTATTGTCCATGTCCGATGATTTTGTGTGTCGAGTTTCAACATTAGGAAC--G-GA 678
Query 611 AGT-GT-AC-TGGAGAATGATCGAATGTTCGATACCCCAT-AGGCCTTTACGTGGTGAGA 666
||| || || ||||||| | ||||||||||| |||||||| | ||||||| | ||||||
Sbjct 679 AGTAGTGACTTGGAGAACGGTCGAATGTTCGGTACCCCATCA-CCCTTTACATAGTGAGA 737
Query 667 TATGCATCGATGGAGTTTTGTATTATGTAGCTGAGTGC-ACT-GGAAATAAAATTCCACA 724
||||||| ||||| || ||||||||| ||||| || || | || || ||| |||| |
Sbjct 738 TATGCATGGATGGGGTATTGTATTATTTAGCT-AG-GCGTGTGGGCGATGAAACTCCAAA 795
Query 725 ACGTTATATGGTAGTTTG-CTTTGATGTTAGGTCTGAAAAG-TTCAAGTTTCTAGC--T- 779
|| ||||||||||| | |||||| ||||| | || | || |||||||||||| | |
Sbjct 796 ACCTTATATGGTAG-CAGCCTTTGAAGTTAGAT-TGGAGAGATTCAAGTTTCTACCAATG 853
Query 780 G---T-AGAACT-TATA-A-TTTGG-TGTTCAACTCTGATAAATTGCAAAGGTAAATTGG 831
| | || | | || | | |||| |||||| | | ||| ||| ||||||||| ||||
Sbjct 854 GATCTCAG-A-TGTAAACACATTGGTTGTTCAGCAGTCATAGATTACAAAGGTAAGTTGG 911
Query 832 GCGTACTATGGTCATCGCCCTTTGG-TC-TTACTCATGAAC-TCACA-A-AATA-TTTTG 885
|||| ||||| | | | ||| || | || || ||| |||| | || | |||||
Sbjct 912 CCGTAGTATGG-C-T--AAATGTGGATCGTGAC-AATCAACGACACATAGAA-AGTTTTG 965
Query 886 TGTTGTG-GATTCTCGAA-GATGCCAATGAATTGAGATGGTC-GAAGACTACCTAC-ACA 941
| || | | |||| || |||| ||||| ||| |||||| || | || ||| | |
Sbjct 966 AGCTGCGTG-TTCT-AAATGATGTTGATGAAGTGAAATGGTCTCAA-ATTATTTACGA-A 1021
Query 942 TTGCCGTCTTATTGGAAGAATCTAGTTGCGAATAACTC-TC-TATACATTGTCGGGATGA 999
||||| ||||||||| |||||| |||| || | || | ||| |||||| |||||||
Sbjct 1022 TTGCCAAATTATTGGAATAATCTACCTGCGGAT-A-TCGACGTATCCATTGTTGGGATGA 1079
Query 1000 CTAGTGCAGGTGAAATTGTGTTATCGACA 1028
|||||||||||||||||||||| |||||
Sbjct 1080 CTAGTGCAGGTGAAATTGTGTTGGCGACA 1108
> AT2G16450.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:7131520-7132803 REVERSE LENGTH=1284
Length=1284
Score = 67.6 bits (36), Expect = 3e-10
Identities = 40/42 (95%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 727 GTTATATGGTAGTTTGCTTTGATGTTAGGTCTGAAAAGTTCA 768
|||||||| |||||||||||||||||||||||||||| ||||
Sbjct 719 GTTATATGATAGTTTGCTTTGATGTTAGGTCTGAAAAATTCA 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60090052365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5