BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937450

Length=344
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G47070.1 | Symbols:  | LOCATED IN: thylakoid, chloroplast th...   499    6e-141


> AT3G47070.1 | Symbols:  | LOCATED IN: thylakoid, chloroplast 
thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED 
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; 
CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein 
TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins 
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr3:17337065-17337733 REVERSE LENGTH=669
Length=669

 Score =  499 bits (270),  Expect = 6e-141
 Identities = 324/349 (93%), Gaps = 8/349 (2%)
 Strand=Plus/Plus

Query  1    AAGAGAGAGAGATAACAACAATGGTTTCTTCGCTTCTTATGTCATTTGCTCCGGCCACCG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  207  AAGAGAGAGAGATAACAACAATGGTTTCTTCGCTTCTTATGTCATTTGCTCCGGCCACCG  266

Query  61   TGAGGGTTTACGCCACTAGCACAAAGGGAGCTTCAGGCGGTGCAAAGGAGGAGAAGAACC  120
            |||||||||||||||| ||||||||||||| |||||||||  |||||||||||||||| |
Sbjct  267  TGAGGGTTTACGCCACAAGCACAAAGGGAGGTTCAGGCGGCCCAAAGGAGGAGAAGAATC  326

Query  121  CCATCGACTTTGTTCTTGGGTTTATGACAAAACAAGATCAGTTCTACGAGACTAATCCAA  180
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct  327  CCATCGACTTTGTTCTTGGGTTTATGACAAAACAAGATCAGTTCTATGAGACTAATCCAC  386

Query  181  TTCTAAAGAAGGTGGAGGAGAAAGAAGGCACCACC---GGAGGCCGAGGAACCGTTCGCG  237
            |||||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||
Sbjct  387  TTCTAAAGAAGGTGGATGAGAAAGAAGGCACCACCACCGGAGGCCGAGGAACCGTTCGCG  446

Query  238  GCGGCAAAAACTCAGCTCCCACGCCAGTGCCGCCGAAGAAGAGCGAGGGTGGATTTGGTG  297
            | || |||||||||||||| ||||| ||||||   |||||||||||||||||||||||||
Sbjct  447  GTGGTAAAAACTCAGCTCCGACGCCTGTGCCG---AAGAAGAGCGAGGGTGGATTTGGTG  503

Query  298  GATTTGGTGGCCTCTTCAAAAAATAGAAGAAAAA--TGTATAGTAATTT  344
            | || ||  |||||||||| ||||||||||||||  |||||||||||||
Sbjct  504  GCTTAGGAAGCCTCTTCAAGAAATAGAAGAAAAAAATGTATAGTAATTT  552



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16085679680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5