BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937456 Length=991 Score E Sequences producing significant alignments: (Bits) Value AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containin... 902 0.0 > AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing protein | chr3:17351141-17352822 REVERSE LENGTH=1305 Length=1305 Score = 902 bits (488), Expect = 0.0 Identities = 533/555 (96%), Gaps = 2/555 (0%) Strand=Plus/Plus Query 1 ACGAAGAGAAATTTGAAAGGATGAATCCATTGACGCAGGTGAAGAATTTACAGAAGATAA 60 ||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 34 ACGCAGAGAAATTTGAAAAGATGAATCCATTGACGCAGGTGAAGAATCTACAGAAGATAA 93 Query 61 ACGCTAGGGAATCAGATTTAGGAATTTCTGAAGAAGCTTCATGGCACGCTAAGTACAAAA 120 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 94 ACGCTAGGGAATCAGATTTAGGAATATCTGATGAAGCTTCATGGCACGCTAAGTACAAAA 153 Query 121 ACTCTGCCTATGTCTACGTCGGATGCATACCGTTCGATCTCACCGAAGGTGATCTCCTCG 180 ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||| Sbjct 154 ACTCTGCATATGTCTACGTCGGAGGCATACCGTTCGATCTCACCGAAGGTGATCTTCTCG 213 Query 181 CCGTCTTCTCACAATATGGTGAAATTGTTGATGTCAATCTTATTCGAGACAAGGGAACTG 240 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 214 CCGTCTTCTCTCAATATGGTGAAATTGTTGATGTCAATCTTATTCGAGACAAGGGAACGG 273 Query 241 GTAAATCTAAAGGTTTTGCATTTCTTGCTTATGAAGATCAGAGAAGTACCGTTCTTGCTG 300 ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 274 GTAAATCTAAAGGTTTTGCTTTTCTTGCTTATGAAGATCAGAGAAGTACCATTCTTGCTG 333 Query 301 TTGATAATCTGAATGGAGCTCTTGTGTTGGGGCGGACTATTAAGGTGGACCATTGTAGGG 360 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| Sbjct 334 TTGATAATCTGAATGGAGCTCTTGTGTTGGGACGGACCATTAAGGTGGACCATTGTGGGG 393 Query 361 AATACAAAAAGCATGAAGAAGAGGATGAAGAGACGCGACAG-CAGAATAGAGAGGCTCGT 419 |||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||| Sbjct 394 CATACAAAAAGCACGAAGAGGAGGATGAAGAGACGCGAC-GCCAGAATAGAGAGGCTCGT 452 Query 420 GGTGTATGCAGAGCGTTTCAGAGAGGAGAGTGTACTCGTGGTGATTCTTGCAAATTTTCC 479 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 453 GGTGTATGCAGAGCTTTTCAGAGAGGAGAGTGTACTCGTGGTGATTCTTGCAAATTTTCC 512 Query 480 CACGATGAAAAAAGAGCTGCAAATACTGGTTGGGGTCATGAAGAGGATAGAAGTTCCAGG 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 513 CACGATGAAAAAAGAGCTGCAAATACTGGTTGGGGTCATGAAGAGGATAGAAGTTCCAAG 572 Query 540 TGGGATCATGACAAG 554 ||||||||||||||| Sbjct 573 TGGGATCATGACAAG 587 Score = 671 bits (363), Expect = 0.0 Identities = 453/496 (91%), Gaps = 8/496 (2%) Strand=Plus/Plus Query 403 AGAATAGAGAGGCTCGTGGTGTATGCAGAGCGTTTCAGAGAGGAGAGTGTACTCGTGGTG 462 |||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 586 AGAATAGAGAGGGTCGTGGTGTTTGCAGAGCTTTTCAGAGAGGAGAGTGTACTCGTGGTG 645 Query 463 ATTCTTGCAAATTTTCCCACGATGAAAAAAGAGCTGCAAATACTGGTTGGGGTCATGAAG 522 ||||||| |||||||| || ||||||||||||||||||| |||||||||||||||||||| Sbjct 646 ATTCTTGTAAATTTTCACATGATGAAAAAAGAGCTGCAACTACTGGTTGGGGTCATGAAG 705 Query 523 AGGATAGAAGTTCCAGGTGGGATCATGACAAGTTTAATGGTGCTAAAAAGGGTGGTACAA 582 ||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| Sbjct 706 AGGATAGAAGTTCCAAGTGGGATCAAGACAAGTTAAATGGTGCTAAAAAGGGTGGTACAA 765 Query 583 GTTTTGGCCATCGAGGAGATTTCAAACCTGATGCGGAAGAGAAAAGTTACAGAGGAAAGG 642 |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 766 GTTTTGGCAATCGAGGAGATTTCAAACCTGATGTGGAAGAGAAAAGTTACAGAGGAAGGG 825 Query 643 GTGATGGAGTTGCCTGGTATGGCCGTCCTAAAGAAAGAGAAAGAGTGGAAAGGGAGGATA 702 ||||||||| ||||| ||||||||| |||||||| |||||||||||||| |||||||||| Sbjct 826 GTGATGGAGATGCCTCGTATGGCCGCCCTAAAGAGAGAGAAAGAGTGGATAGGGAGGATA 885 Query 703 TGGGGCTAAGGTCAAGAGATGCTTATGATATGAGGGAACAAAAGAGAACAGGACGGTATG 762 |||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 886 TGGGGCCAAGGTCAAGAGATGCTTATGATATGAAGGAACAAAAGAGATCAGGACGGTATG 945 Query 763 ATGATTCGCGAT-CTAGAAGTCACAATGCTGGAAATGAGTATAATTATATAAGGGAGGAC 821 || || || || ||||||| ||||||| || |||| | || | || ||||||||||| Sbjct 946 ATAATGCGT-ATTCTAGAAGGCACAATGATG-AAATT-G-AT--T-ATGTAAGGGAGGAC 998 Query 822 AAGGGATCCAGAACACGTGATTGGGAGAAATTGAAGGCAGAATCTAGAAGAGATCATAAC 881 |||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |||| Sbjct 999 AAGGGATCCAGAGCACAAGATTGGGAGAAAAGGAAGGCAGAATCTAGAAGAGATCGTAAC 1058 Query 882 GACAGGGAGGGAAAAG 897 |||||||||| ||||| Sbjct 1059 GACAGGGAGGAAAAAG 1074 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48526186002 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5