BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937456
Length=991
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containin... 902 0.0
> AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351141-17352822 REVERSE LENGTH=1305
Length=1305
Score = 902 bits (488), Expect = 0.0
Identities = 533/555 (96%), Gaps = 2/555 (0%)
Strand=Plus/Plus
Query 1 ACGAAGAGAAATTTGAAAGGATGAATCCATTGACGCAGGTGAAGAATTTACAGAAGATAA 60
||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 34 ACGCAGAGAAATTTGAAAAGATGAATCCATTGACGCAGGTGAAGAATCTACAGAAGATAA 93
Query 61 ACGCTAGGGAATCAGATTTAGGAATTTCTGAAGAAGCTTCATGGCACGCTAAGTACAAAA 120
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 94 ACGCTAGGGAATCAGATTTAGGAATATCTGATGAAGCTTCATGGCACGCTAAGTACAAAA 153
Query 121 ACTCTGCCTATGTCTACGTCGGATGCATACCGTTCGATCTCACCGAAGGTGATCTCCTCG 180
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 154 ACTCTGCATATGTCTACGTCGGAGGCATACCGTTCGATCTCACCGAAGGTGATCTTCTCG 213
Query 181 CCGTCTTCTCACAATATGGTGAAATTGTTGATGTCAATCTTATTCGAGACAAGGGAACTG 240
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 214 CCGTCTTCTCTCAATATGGTGAAATTGTTGATGTCAATCTTATTCGAGACAAGGGAACGG 273
Query 241 GTAAATCTAAAGGTTTTGCATTTCTTGCTTATGAAGATCAGAGAAGTACCGTTCTTGCTG 300
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 274 GTAAATCTAAAGGTTTTGCTTTTCTTGCTTATGAAGATCAGAGAAGTACCATTCTTGCTG 333
Query 301 TTGATAATCTGAATGGAGCTCTTGTGTTGGGGCGGACTATTAAGGTGGACCATTGTAGGG 360
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||
Sbjct 334 TTGATAATCTGAATGGAGCTCTTGTGTTGGGACGGACCATTAAGGTGGACCATTGTGGGG 393
Query 361 AATACAAAAAGCATGAAGAAGAGGATGAAGAGACGCGACAG-CAGAATAGAGAGGCTCGT 419
|||||||||||| ||||| ||||||||||||||||||| | ||||||||||||||||||
Sbjct 394 CATACAAAAAGCACGAAGAGGAGGATGAAGAGACGCGAC-GCCAGAATAGAGAGGCTCGT 452
Query 420 GGTGTATGCAGAGCGTTTCAGAGAGGAGAGTGTACTCGTGGTGATTCTTGCAAATTTTCC 479
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 GGTGTATGCAGAGCTTTTCAGAGAGGAGAGTGTACTCGTGGTGATTCTTGCAAATTTTCC 512
Query 480 CACGATGAAAAAAGAGCTGCAAATACTGGTTGGGGTCATGAAGAGGATAGAAGTTCCAGG 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 513 CACGATGAAAAAAGAGCTGCAAATACTGGTTGGGGTCATGAAGAGGATAGAAGTTCCAAG 572
Query 540 TGGGATCATGACAAG 554
|||||||||||||||
Sbjct 573 TGGGATCATGACAAG 587
Score = 671 bits (363), Expect = 0.0
Identities = 453/496 (91%), Gaps = 8/496 (2%)
Strand=Plus/Plus
Query 403 AGAATAGAGAGGCTCGTGGTGTATGCAGAGCGTTTCAGAGAGGAGAGTGTACTCGTGGTG 462
|||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 586 AGAATAGAGAGGGTCGTGGTGTTTGCAGAGCTTTTCAGAGAGGAGAGTGTACTCGTGGTG 645
Query 463 ATTCTTGCAAATTTTCCCACGATGAAAAAAGAGCTGCAAATACTGGTTGGGGTCATGAAG 522
||||||| |||||||| || ||||||||||||||||||| ||||||||||||||||||||
Sbjct 646 ATTCTTGTAAATTTTCACATGATGAAAAAAGAGCTGCAACTACTGGTTGGGGTCATGAAG 705
Query 523 AGGATAGAAGTTCCAGGTGGGATCATGACAAGTTTAATGGTGCTAAAAAGGGTGGTACAA 582
||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 706 AGGATAGAAGTTCCAAGTGGGATCAAGACAAGTTAAATGGTGCTAAAAAGGGTGGTACAA 765
Query 583 GTTTTGGCCATCGAGGAGATTTCAAACCTGATGCGGAAGAGAAAAGTTACAGAGGAAAGG 642
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 766 GTTTTGGCAATCGAGGAGATTTCAAACCTGATGTGGAAGAGAAAAGTTACAGAGGAAGGG 825
Query 643 GTGATGGAGTTGCCTGGTATGGCCGTCCTAAAGAAAGAGAAAGAGTGGAAAGGGAGGATA 702
||||||||| ||||| ||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 826 GTGATGGAGATGCCTCGTATGGCCGCCCTAAAGAGAGAGAAAGAGTGGATAGGGAGGATA 885
Query 703 TGGGGCTAAGGTCAAGAGATGCTTATGATATGAGGGAACAAAAGAGAACAGGACGGTATG 762
|||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 886 TGGGGCCAAGGTCAAGAGATGCTTATGATATGAAGGAACAAAAGAGATCAGGACGGTATG 945
Query 763 ATGATTCGCGAT-CTAGAAGTCACAATGCTGGAAATGAGTATAATTATATAAGGGAGGAC 821
|| || || || ||||||| ||||||| || |||| | || | || |||||||||||
Sbjct 946 ATAATGCGT-ATTCTAGAAGGCACAATGATG-AAATT-G-AT--T-ATGTAAGGGAGGAC 998
Query 822 AAGGGATCCAGAACACGTGATTGGGAGAAATTGAAGGCAGAATCTAGAAGAGATCATAAC 881
|||||||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||
Sbjct 999 AAGGGATCCAGAGCACAAGATTGGGAGAAAAGGAAGGCAGAATCTAGAAGAGATCGTAAC 1058
Query 882 GACAGGGAGGGAAAAG 897
|||||||||| |||||
Sbjct 1059 GACAGGGAGGAAAAAG 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48526186002
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5