BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937462
Length=676
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47180.1 | Symbols: | RING/U-box superfamily protein | chr3... 865 0.0
> AT3G47180.1 | Symbols: | RING/U-box superfamily protein | chr3:17372800-17373547
REVERSE LENGTH=748
Length=748
Score = 865 bits (468), Expect = 0.0
Identities = 602/663 (91%), Gaps = 23/663 (3%)
Strand=Plus/Plus
Query 7 CTTCTTCTTCTCTAATGGATAATCAAGGAGAAGAGCCTAAGCAGCCTCCAAACAAACTTC 66
||| |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||
Sbjct 81 CTTATTCTTCTCTAATGGATAACCAAGAAGAAGAGCCTAAGCAACCTCCAAACAAACTTC 140
Query 67 CCGATCTAACCCTCTTCGAGCAAGCAAATTCTGAAGTTGCTCTTGCTGCCTCCCAAGCTA 126
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 CCGATCTAGCCCTCTTTGAGCAAGCAAATTCTGAAGTTGCTCTTGCTGCCTCCCAAGCTA 200
Query 127 ATTCCCAATTTGCCCCTTCTAAT-CATGACTCGGCCT-CTTCAAGGCTTTCAatgataga 184
||||||| ||||||| | || || ||||| || | || | |||| | |||||||||||||
Sbjct 201 ATTCCCATTTTGCCCATGCT-ATGCATGATTC-GTCTCCCTCAATGATTTCAATGATAGA 258
Query 185 aagtgatgaagaatctgaagatgaagatgaagaagaagaaagcaatgagaaCTACTACGA 244
|||||| |||||||| ||||||| |||||||||| ||||||||||||||||||
Sbjct 259 AAGTGACGAAGAATC------TGAAGAT---GAAGAAGAAATCAATGAGAACTACTACGA 309
Query 245 GTATTTCGATAGCAATGGATTTGGAGAAGATGAAGACGAAATCAATGAGTTTCTTGAAGA 304
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 310 GTATTTCGATAGCAATGGATTTGGAGTAGATGAAGACGAAATCAATGAGTTTCTTGAAGA 369
Query 305 TCAAGAAAGCAACTCCAACATT------GAGGATGATTTCTTGGAGGAAGAAGATGAGGT 358
|||||||||||| |||||| || |||||||||||||||||||||||||||||| |
Sbjct 370 TCAAGAAAGCAATTCCAACCTTGAGGAGGAGGATGATTTCTTGGAGGAAGAAGATGAGAT 429
Query 359 TGACCCCGACCAGTTGTCTTACGAGGAGCTGATTGCACTTGGAGATTTCATCGGAGTCGA 418
||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 430 TGATCCCGACCAATTGTCTTACGAGGAACTGATTGCGCTTGGAGATTTCATCGGAGTCGA 489
Query 419 AAAACGT-GGCATGAA-TCCAAGCGAAATCTCCACGTGTTTGAACGCATCTACCTACATA 476
||| ||| ||| | || ||| | |||||||| |||||||||||||||||||| ||| ||
Sbjct 490 AAACCGTGGGC-T-AACTCCTATTGAAATCTCTACGTGTTTGAACGCATCTACATACGTA 547
Query 477 TTTTCTCATAACAAAAACGAGATTGATCGTTGTGTGGTTTGCCAAATGGAGTTTGAAGAA 536
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 548 TTTTCACATAACAAAAACGAGATTGATCGTTGTGTAGTTTGCCAAATGGAGTTTGAAGAA 607
Query 537 AGAGAATCTTTGGTCGTTCTCCGACCTTGTGACCATCCATACCACTCTGAATGTATAACC 596
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 608 AGAGAATCTTTGGTCGTTCTCCGACCTTGTGACCATCCATACCACTCTGAGTGTATAACC 667
Query 597 AAATGGCTTGAGACGAAGAAGATTTGTCCCATTTGTTGTTCTGACCCATCTGTGAGCTGA 656
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 668 AAATGGCTTGAGACAAAGAAGATTTGTCCCATTTGTTGTTCTGAACCATCTGTCAGTTGA 727
Query 657 AAT 659
|||
Sbjct 728 AAT 730
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32702429697
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5