BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937466
Length=1795
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47340.1 | Symbols: ASN1, DIN6, AT-ASN1 | glutamine-dependen... 2837 0.0
> AT3G47340.1 | Symbols: ASN1, DIN6, AT-ASN1 | glutamine-dependent
asparagine synthase 1 | chr3:17437884-17441243 REVERSE LENGTH=2207
Length=2207
Score = 2837 bits (1536), Expect = 0.0
Identities = 1701/1783 (95%), Gaps = 2/1783 (0%)
Strand=Plus/Plus
Query 10 AAAGAAAAAACATGTGTGGAATACTTGCCGTTTTAGGATGTTCCGACGATTCTCAGGCCA 69
||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 190 AAAAAAAAAACATGTGTGGAATACTTGCCGTGTTAGGATGTTCCGATGATTCTCAGGCCA 249
Query 70 AGAGAGTTCGTGTTCTTGAGCTTTCTCGCAGATTGAGGCACAGGGGACCTGACTGGAGTG 129
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 250 AGAGAGTTCGTGTTCTTGAGCTTTCTCGCAGATTGAGGCACAGAGGACCTGACTGGAGTG 309
Query 130 GATTATATCAGAACGGTGACAATTACTTGGCCCATCAACGTCTTGCGGTCATTGATCCTG 189
| |||||||||||||| || |||||||||||||||||||||||||| ||||| |||||||
Sbjct 310 GCTTATATCAGAACGGAGATAATTACTTGGCCCATCAACGTCTTGCCGTCATCGATCCTG 369
Query 190 CTTCCGGTGATCAACCTCTCTTCAACGAAGACAAGACCATTGTTGTCACGGTGAATGGAG 249
||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 370 CTTCCGGTGATCAACCTCTTTTCAACGAGGACAAGACCATTGTTGTCACGGTGAACGGAG 429
Query 250 AGATTTATAACCATGAGGAGCTGAGAAAACGTTTGAAGAATCACAAGTTCCGTACTGGTA 309
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 430 AGATTTATAACCATGAGGAGCTGAGAAAACGTCTGAAGAATCACAAGTTCCGTACTGGTA 489
Query 310 GTGATTGTGACGTCATTGCACACTTGTACGAGGAGTATGGTGTGGATTTTGTTGATATGT 369
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 490 GTGATTGTGAAGTCATTGCTCACTTGTACGAGGAGTATGGTGTGGATTTTGTTGATATGT 549
Query 370 TGGATGGAATCTTCTCCTTTGTGTTGCTGGACACTA-GAGATAATTCCTTCATGGTGGCT 428
|||||||||| ||||||||||||||||| ||||| | ||||||| || ||||||||||||
Sbjct 550 TGGATGGAATATTCTCCTTTGTGTTGCTCGACAC-ACGAGATAACTCTTTCATGGTGGCT 608
Query 429 CGTGACGCGATTGGTGTCACTCCGCTCTACATTGGCTGGGGATTAGATGGATCTGTCTGG 488
||||| ||||||||||||||| ||||||||||||| |||||| |||| |||||||| |||
Sbjct 609 CGTGATGCGATTGGTGTCACTTCGCTCTACATTGGTTGGGGACTAGACGGATCTGTGTGG 668
Query 489 ATATCTTCAGAAATGAAAGGCTTAAACGATGATTGTGAGCATTTCGAAACGTTTCCTCCA 548
||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 669 ATATCTTCAGAGATGAAAGGCCTAAACGATGACTGTGAGCATTTCGAAACGTTTCCTCCA 728
Query 549 GGTCATTTTTATTCAAGCAAATTAGGAGGGTTTAAGCAATGGTACAATCCTCCTTGGTTC 608
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 729 GGTCATTTTTATTCAAGCAAATTAGGAGGGTTTAAGCAATGGTATAATCCTCCTTGGTTC 788
Query 609 AATGAATCCGTTCCTTCAAAGCCTTATGAACCTCTTGCGATAAGACGCGCCTTTGAAAAC 668
|||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 789 AATGAATCTGTTCCTTCAACGCCTTATGAGCCTCTTGCGATAAGACGCGCCTTTGAAAAC 848
Query 669 GCTGTGATTAAGCGGTTGATGACTGATGTTCCCTTTGGAGTTTTGCTCTCTGGTGGTCTT 728
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 849 GCTGTGATTAAGCGGTTGATGACTGATGTTCCATTTGGAGTTTTGCTCTCTGGTGGTCTT 908
Query 729 GATTCTTCTCTTGTTGCCTCCATCACTGCCCGTTACTTGGCCGGTACTAAAGCAGCTAAG 788
|||||||| |||||||||||||||||||| ||| |||||||||||||||| || ||||||
Sbjct 909 GATTCTTCCCTTGTTGCCTCCATCACTGCACGTCACTTGGCCGGTACTAAGGCGGCTAAG 968
Query 789 CAATGGGGTCCGCAGCTCCATTCCTTTTGCGTTGGCCTTGAGGGCTCGCCGGACTTGAAG 848
||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 969 CAATGGGGTCCTCAGCTCCATTCCTTTTGCGTTGGTCTTGAGGGCTCACCGGACTTGAAG 1028
Query 849 GCAGGGAAAGAGGTGGCGGAATATTTAGGGACGGTGCACCACGAGTTCCACTTCTCGGTG 908
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1029 GCAGGGAAAGAGGTGGCGGAATATTTGGGGACGGTGCACCACGAGTTCCACTTCTCGGTG 1088
Query 909 CAGGACGGGATTGATGCAATAGAGGATGTGATTTACCATGTGGAGACTTATGATGTGACG 968
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1089 CAGGACGGGATTGATGCGATAGAGGATGTGATTTACCATGTTGAGACCTATGATGTGACG 1148
Query 969 ACTATCAGAGCGAGCACACCGATGTTCTTGATGTCCCGGAAAATCAAGTCTCTAGGGGTC 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 ACTATCAGAGCGAGCACACCGATGTTCTTGATGTCCCGGAAAATCAAGTCTCTAGGGGTC 1208
Query 1029 AAGATGGTTCTCTCCGGTGAAGGTTCCGACGAGATCTTTGGAGGGTATCTCTATTTCCAT 1088
||||||||||||||||| |||||| | |||||||||||||||||||| |||||||||||
Sbjct 1209 AAGATGGTTCTCTCCGGCGAAGGTGCGGACGAGATCTTTGGAGGGTACCTCTATTTCCAC 1268
Query 1089 AAGGCACCTAACAAGCACGAGTTTCACCAAGAAACTTGTCGCAAGATCAAGGCTCTTCAC 1148
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 AAGGCACCTAACAAGAAAGAGTTTCACCAAGAAACTTGTCGCAAGATCAAGGCTCTTCAC 1328
Query 1149 AAGTATGACTGTCTAAGAGCCAACAAATCTACATCTGCCTTTGGACTAGAGGCACGTGTT 1208
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1329 AAGTATGACTGTCTAAGAGCCAACAAATCTACCTCTGCCTTTGGACTAGAGGCACGTGTT 1388
Query 1209 CCTTTCCTTGACAAAGATTTCATCAACACAGCTATGTCTCTCGACCCTGAATCCAAGATG 1268
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 CCTTTCCTTGACAAAGACTTCATCAACACAGCTATGTCTCTCGACCCTGAATCCAAGATG 1448
Query 1269 ATCAAGCCAGAGGAAGGGAGGATTGAGAAATGGGTTCTAAGGAGAGCCTTCGACGACGAA 1328
||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1449 ATCAAGCCAGAGGAAGGAAGGATCGAGAAATGGGTTCTAAGGAGAGCCTTTGACGACGAA 1508
Query 1329 GAACGTCCTTATCTGCCAAAGCACATTCTATACAGACAGAAAGAACAGTTCAGTGATGGT 1388
|||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1509 GAACGTCCTTATCTACCAAAACACATTCTCTACAGACAGAAAGAACAGTTCAGTGATGGT 1568
Query 1389 GTTGGCTACAGTTGGATCGATGGCCTGAAAGATCACGCTGCTCAAAATGTTAATGACAAG 1448
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1569 GTTGGCTACAGTTGGATCGATGGCCTGAAAGATCACGCTGCTCAAAATGTCAATGACAAG 1628
Query 1449 ATGATGTCCAACGCGGCGCATATCTTCCCTCACAACACACCAAACACTAAAGAAGCTTAC 1508
|||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1629 ATGATGTCGAACGCGGGGCATATCTTCCCTCACAACACTCCAAACACTAAAGAAGCTTAC 1688
Query 1509 TACTACAGAATGATCTTTGAGAGGTTCTTCCCACAGAACTCTGCGAGACTAACAGTTCCT 1568
|||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 1689 TACTACAGAATGATCTTTGAAAGGTTCTTCCCGCAGAACTCTGCGAGACTAACGGTTCCT 1748
Query 1569 GGAGGTGCGACCGTGGCTTGCTCGACTGCAAAGGCAGTGGAGTGGGATGCAAGCTGGTCC 1628
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1749 GGAGGTGCCACCGTGGCTTGTTCGACTGCAAAGGCAGTGGAGTGGGATGCAAGCTGGTCC 1808
Query 1629 AACAATATGGATCCATCAGGAAGAGCCGCCATCGGAGTTCACCTCTCGGCCTATGACGGC 1688
||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |||
Sbjct 1809 AACAATATGGATCCATCAGGAAGAGCCGCTATCGGAGTTCACCTTTCGGCCTACGATGGC 1868
Query 1689 AAGAACGTGGCATTGCCCATGCCGCCACTTAAGGCAATTGACGACATGCCGATGATGATG 1748
||||||||||||||| |||| || |||||||||||||||||| |||||||||||||||||
Sbjct 1869 AAGAACGTGGCATTGACCATACCACCACTTAAGGCAATTGACAACATGCCGATGATGATG 1928
Query 1749 GGTCAAGGAGTTGTGATTCAGACATAACTTTGAAGGGGAAATG 1791
||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1929 GGTCAAGGAGTTGTGATTCAGTCATAACTTCGAAGGAGAAATG 1971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88804764105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5