BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937469 Length=692 Score E Sequences producing significant alignments: (Bits) Value AT3G47350.2 | Symbols: ATHSD2, HSD2 | hydroxysteroid dehydrogen... 497 4e-140 AT3G47360.1 | Symbols: ATHSD3, HSD3 | hydroxysteroid dehydrogen... 189 3e-47 > AT3G47350.2 | Symbols: ATHSD2, HSD2 | hydroxysteroid dehydrogenase 2 | chr3:17446818-17449703 FORWARD LENGTH=996 Length=996 Score = 497 bits (269), Expect = 4e-140 Identities = 312/332 (94%), Gaps = 5/332 (2%) Strand=Plus/Plus Query 204 GGATATTAACTTTTGGGGCTCAACGTACATCACTTATTTTGCTATTCCTCATCTTCGAAA 263 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 489 GGATATCAACTTTTGGGGCTCAACGTACATCACTTATTTTGCTATTCCTCATCTTCGAAA 548 Query 264 AAGCAAAGGAAAAATTGTTGTGATTACTTCTGCTACGGCAATTATACCTTTGCCATCGGC 323 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||| Sbjct 549 AAGCAAAGGAAAAATTGTTGTGATTTCTTCTGCTACGGCAATTATACCTTTGCAAGCGGC 608 Query 324 AAGCGTCTATTCAGCAAGCAAAGCAGCTTTATTAAAATTCTTTGAAACATTAAGAGTTGA 383 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 609 AAGCGTCTATTCAGCAAGCAAAGCAGCTTTAGTAAAATTCTTTGAAACATTAAGAGTTGA 668 Query 384 GATCAGTCCATG-TATCAAAATAACAATTGCTATTCCCGAATTTATATCTACAGATATGA 442 ||||||||| | ||||||||||||||| ||| |||||| |||||||||||| ||||||| Sbjct 669 GATCAGTCCC-GATATCAAAATAACAATCGCTCTTCCCGGATTTATATCTACGGATATGA 727 Query 443 CCACTC---AGTTTAAAGAAATGTATGGTTCAGATTTCATCCTTTCAGAATCAGTGAGTA 499 |||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 728 CCACTCCTCAGTTTAAAGAAATGTATGGTTCAGATTTCATACTTTCGGAATCAGTGAGTC 787 Query 500 AATGCGCAAAAGCCATCTTCAGAGGTATTGGT 531 |||||||||||| |||||||||||||||||| Sbjct 788 GATGCGCAAAAGCGATCTTCAGAGGTATTGGT 819 Score = 219 bits (118), Expect = 4e-56 Identities = 164/186 (88%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 19 AACATGGATAAGCTTCACAATATTCTTAATCTTCTTCTACCTCCTCTTACCATCAGTTTT 78 |||||||||| |||||||| |||||| ||| ||||||| ||||||||||| ||||||||| Sbjct 28 AACATGGATATGCTTCACACTATTCTCAATTTTCTTCTTCCTCCTCTTACTATCAGTTTT 87 Query 79 CTTGTCTTCTTTTACCCATTTTATCTTTTGATCAAACTTGTGAGTTGTCTTTACAAGAAC 138 || ||| | |||||||||||||||||||| | ||||||| ||||||||| || ||| || Sbjct 88 CTCGTCCTATTTTACCCATTTTATCTTTTTACCAAACTTATGAGTTGTC-TT--AAGCAC 144 Query 139 ATTCGCTTTGAAAACGTTGCCGGAAAAGTAGTTCTAATCACCGGAGCTTCCTCCGGCATT 198 ||| ||||||||||||| | || ||||||||||||||||||||||||||||||||||| Sbjct 145 CTTCACTTTGAAAACGTTACTGGGAAAGTAGTTCTAATCACCGGAGCTTCCTCCGGCATC 204 Query 199 GGAGAG 204 |||||| Sbjct 205 GGAGAG 210 > AT3G47360.1 | Symbols: ATHSD3, HSD3 | hydroxysteroid dehydrogenase 3 | chr3:17451112-17452843 FORWARD LENGTH=930 Length=930 Score = 189 bits (102), Expect = 3e-47 Identities = 146/167 (87%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 40 ATTCTTAATCTTCTTCTACCTCCTCTTACCATCAGT-TTTCT-TGTCTTCTTTTACCCAT 97 ||||| ||||||||||| ||||||||||| |||| | ||||| | || | |||||||||| Sbjct 19 ATTCTCAATCTTCTTCTTCCTCCTCTTACTATCA-TCTTTCTCT-TCCTGTTTTACCCAT 76 Query 98 TTTATCTTTTGATCAAACTTGTGAGTTGTCTTTACAAGAACATTCGCTTTGAAAACGTTG 157 ||||||||||||||||||||||| ||||||| |||||| ||| ||| |||||||| | Sbjct 77 TTTATCTTTTGATCAAACTTGTGCTTTGTCTTCGTAAGAACCTTCACTTCGAAAACGTAG 136 Query 158 CCGGAAAAGTAGTTCTAATCACCGGAGCTTCCTCCGGCATTGGAGAG 204 || ||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 137 CCAGAAAAGTAGTTCTAATCACCGGAGCTTCCTCTGGCATCGGAGAG 183 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33506176049 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5