BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937471
Length=409
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47370.2 | Symbols: | Ribosomal protein S10p/S20e family pr... 577 3e-164
AT3G45030.1 | Symbols: | Ribosomal protein S10p/S20e family pr... 468 2e-131
AT5G62300.1 | Symbols: | Ribosomal protein S10p/S20e family pr... 412 1e-114
> AT3G47370.2 | Symbols: | Ribosomal protein S10p/S20e family
protein | chr3:17453478-17454662 REVERSE LENGTH=620
Length=620
Score = 577 bits (312), Expect = 3e-164
Identities = 365/391 (93%), Gaps = 2/391 (1%)
Strand=Plus/Plus
Query 4 AAA-GAGGT-TAACAAAACATGGCGTATGAACCGATGAAACCCACTAAAGCTGGTTTAGA 61
||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 40 AAACGAGGTGTAACAAAACATGGCGTATGAACCGATGAAGCCCACGAAAGCTGGTTTGGA 99
Query 62 AGAACCCCTCGTGCAGATTCATAAGATCAGGATCACTCTCTCTTCAAAAAATGTCAAGAA 121
| || || | |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 100 GGCTCCTCTGGAGCAGATTCATAAGATCAGGATCACTCTCTCTTCAAAAAATGTGAAGAA 159
Query 122 CTTGGAAAAAGTGTGCACTGACTTGGTTCGTGGAGCTAAGGACAAGAGACTTAGAGTTAA 181
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 160 CTTGGAAAAAGTGTGCACTGATTTGGTCCGTGGAGCTAAGGATAAGAGACTTAGAGTTAA 219
Query 182 GGGACCAGTGAGAATGCCCACTAAGGTTCTTAAGATCACCACCAGAAAGGCACCTTGTGG 241
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 220 GGGACCAGTGAGAATGCCCACTAAGGTTCTTAAGATCACTACCAGAAAGGCACCTTGTGG 279
Query 242 TGAAGGTACCAATACTTGGGACAGATTTGAACTTAGGGTTCACAAGCGTGTGATCGATCT 301
|||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||
Sbjct 280 TGAAGGTACCAATACTTGGGACAGGTTTGAGCTCAGGGTTCACAAGCGTGTCATCGATCT 339
Query 302 CTTCAGCTCCCCTGATGTGGTTAAGCAAATCACATCTATCACCATTGAACCTGGTGTTGA 361
||||||||||||||| || |||||||||||||| |||||||||||||| || ||||||||
Sbjct 340 CTTCAGCTCCCCTGACGTTGTTAAGCAAATCACGTCTATCACCATTGAGCCCGGTGTTGA 399
Query 362 GGTTGAGGTCACTATTGCTGACTCTTAGACA 392
||| |||||||||||||||||||||||||||
Sbjct 400 GGTCGAGGTCACTATTGCTGACTCTTAGACA 430
> AT3G45030.1 | Symbols: | Ribosomal protein S10p/S20e family
protein | chr3:16471386-16472393 REVERSE LENGTH=676
Length=676
Score = 468 bits (253), Expect = 2e-131
Identities = 331/369 (90%), Gaps = 4/369 (1%)
Strand=Plus/Plus
Query 24 GCGTATGAACCGATGAAACCCACTAAA-GCTGGTTTAGAAGAACCCCTCGTGCAGATTCA 82
|||||| |||| |||||| ||| ||| |||||||| ||||| || |||| |||||||||
Sbjct 91 GCGTATCAACCAATGAAA-CCAGGAAAGGCTGGTTTGGAAGAGCCACTCGAGCAGATTCA 149
Query 83 TAAGATCAGGATCACTCTCTCTTCAAAAAATGTCAAGAA-CTTGGAAAAAGTGTGCACTG 141
||||||||||| |||||||| || || ||||||||||| ||| || |||||||||||||
Sbjct 150 CAAGATCAGGATTACTCTCTCCTCCAAGAATGTCAAGAACCTT-GAGAAAGTGTGCACTG 208
Query 142 ACTTGGTTCGTGGAGCTAAGGACAAGAGACTTAGAGTTAAGGGACCAGTGAGAATGCCCA 201
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 209 ATTTGGTTCGTGGAGCTAAGGACAAGAGACTTAGAGTCAAGGGACCAGTGAGAATGCCCA 268
Query 202 CTAAGGTTCTTAAGATCACCACCAGAAAGGCACCTTGTGGTGAAGGTACCAATACTTGGG 261
|||||||||| |||||||| ||| |||| || || ||||||||||| |||||||| ||||
Sbjct 269 CTAAGGTTCTCAAGATCACTACCCGAAAAGCTCCCTGTGGTGAAGGAACCAATACATGGG 328
Query 262 ACAGATTTGAACTTAGGGTTCACAAGCGTGTGATCGATCTCTTCAGCTCCCCTGATGTGG 321
||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||
Sbjct 329 ACAGATTTGAACTTAGGGTGCACAAGCGAGTGATTGATCTCTTCAGCTCTCCTGATGTGG 388
Query 322 TTAAGCAAATCACATCTATCACCATTGAACCTGGTGTTGAGGTTGAGGTCACTATTGCTG 381
| |||||||||||||| ||||||||||||||||||||||||||||||||||| || || |
Sbjct 389 TCAAGCAAATCACATCCATCACCATTGAACCTGGTGTTGAGGTTGAGGTCACCATCGCCG 448
Query 382 ACTCTTAGA 390
|||| ||||
Sbjct 449 ACTCGTAGA 457
> AT5G62300.1 | Symbols: | Ribosomal protein S10p/S20e family
protein | chr5:25021200-25022436 REVERSE LENGTH=658
Length=658
Score = 412 bits (223), Expect = 1e-114
Identities = 324/373 (87%), Gaps = 5/373 (1%)
Strand=Plus/Plus
Query 24 GCGTATGAACCGATGAAACCCA-CTAAAGCTGGTTTAGAAGAACCCCTCGTGCAGATTCA 82
|||||| |||| |||||| ||| || |||||||| ||||| || |||| |||||||||
Sbjct 105 GCGTATCAACCAATGAAA-CCAGGGAAGGCTGGTTTGGAAGAGCCACTCGAGCAGATTCA 163
Query 83 TAAGATCAGGATCACTCTCTCTTCAAAAAATGTCAAGAACTTGGAAAAAGTGTGCACTGA 142
|||||||| || |||||||| || || |||||||||||||||||||||||||| |||||
Sbjct 164 CAAGATCAGAATTACTCTCTCCTCCAAGAATGTCAAGAACTTGGAAAAAGTGTGTACTGA 223
Query 143 CTTGGTTCGTGGAGCTAAGGACAAGAGACTTAGAGTTAAGGGACCAGTGAGAATGCCCAC 202
||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 224 TTTGGTTCGTGGAGCTAAGGACAAGAGACTGAGAGTTAAGGGTCCAGTCAGAATGCCCAC 283
Query 203 TAAGGTTCTTAAGATCACCACCAG-AAAGGCACCTTGTGGTGAAGGTACCAATACTTGGG 261
|||||||| |||||||| ||| | |||| | |||||||||||||| ||||| || ||||
Sbjct 284 CAAGGTTCTCAAGATCACTACCCGTAAAG-CTCCTTGTGGTGAAGGAACCAACACATGGG 342
Query 262 ACAGATTTGAACTTAGGGTTCACAAGCGTGTGATCGATCTCTTCAGCTCCCCTGATGTGG 321
||||||| || |||||||| |||||||| || || ||||| |||||||| ||||||||||
Sbjct 343 ACAGATTCGAGCTTAGGGTACACAAGCGAGTTATAGATCTTTTCAGCTCTCCTGATGTGG 402
Query 322 TTAAGCAAATCACATCTATCACCATTGAACCTGGTGTTGAGGTTGAGGTCACTATTGCTG 381
| ||||| ||||| || ||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 403 TCAAGCAGATCACCTCCATCACCATTGAACCTGGTGTTGAAGTTGAGGTCACCATCGCTG 462
Query 382 ACTCTTAGA-CAA 393
|||| |||| |||
Sbjct 463 ACTCGTAGATCAA 475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19353083365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5