BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937473

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G31115.2 | Symbols:  | Protein of unknown function (DUF1997)...   183    9e-46
  AT5G18500.1 | Symbols:  | Protein kinase superfamily protein | ...   115    3e-25
  AT5G17990.1 | Symbols: TRP1, pat1 | tryptophan biosynthesis 1 |...   104    7e-22


> AT4G31115.2 | Symbols:  | Protein of unknown function (DUF1997) 
| chr4:15130075-15132035 FORWARD LENGTH=1181
Length=1181

 Score =  183 bits (99),  Expect = 9e-46
 Identities = 119/129 (92%), Gaps = 0/129 (0%)
 Strand=Plus/Plus

Query  222  AGAAATTAATGGAGAAAAGAAGCTGACTTTCAATGAGTTTTTGAAAGACCCATCTGGCAT  281
            ||| ||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||
Sbjct  450  AGAGATTAATGGAGAAAAGGAGCTGACTTTCAGTGAGTTTTTGAAACACCCATCTGGCAT  509

Query  282  GGAGGCTGTGATCAACGCTAAGGCTTTGCAGAGTTATCATTTAATTGAGGATACTGATAA  341
            |||||||||||||||||| ||||||||||||||||| |||||| |||| |||| |||| |
Sbjct  510  GGAGGCTGTGATCAACGCAAAGGCTTTGCAGAGTTACCATTTAGTTGATGATAGTGATGA  569

Query  342  TACTTACAG  350
            |||||||||
Sbjct  570  TACTTACAG  578


> AT5G18500.1 | Symbols:  | Protein kinase superfamily protein 
| chr5:6138489-6141630 FORWARD LENGTH=2007
Length=2007

 Score =  115 bits (62),  Expect = 3e-25
 Identities = 64/65 (98%), Gaps = 0/65 (0%)
 Strand=Plus/Plus

Query  361   GTGCACAGAGACATTAAGTCTAGCAACATTCTGATTGATGACAAATTCAATTCTAAAATT  420
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1070  GTGCACAGAGACATTAAGTCTAGTAACATTCTGATTGATGACAAATTCAATTCTAAAATT  1129

Query  421   TCTGA  425
             |||||
Sbjct  1130  TCTGA  1134


> AT5G17990.1 | Symbols: TRP1, pat1 | tryptophan biosynthesis 1 
| chr5:5957213-5959905 FORWARD LENGTH=1676
Length=1676

 Score =  104 bits (56),  Expect = 7e-22
 Identities = 77/87 (89%), Gaps = 2/87 (2%)
 Strand=Plus/Plus

Query  143  AGTTTTTGTC-GAACGAGGCAAACGATGCACTAATTAGTGCCTTTCTGGTTCTCCTGAGA  201
            |||||||| | ||| ||||||||||| || || || ||||||||||| ||||| ||||||
Sbjct  509  AGTTTTTG-CTGAATGAGGCAAACGAGGCGCTGATCAGTGCCTTTCTAGTTCTTCTGAGA  567

Query  202  GCTAAAGGAGAGACATACGAAGAAATT  228
            ||||||||||||||||||||||| |||
Sbjct  568  GCTAAAGGAGAGACATACGAAGAGATT  594



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21363793325


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5