BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937476
Length=1825
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47400.1 | Symbols: | Plant invertase/pectin methylesterase... 2828 0.0
> AT3G47400.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr3:17465590-17468118 FORWARD LENGTH=2054
Length=2054
Score = 2828 bits (1531), Expect = 0.0
Identities = 1730/1828 (95%), Gaps = 5/1828 (0%)
Strand=Plus/Plus
Query 1 ATAGCCAAGAACTTC-AAAAAATGCTTAGAGGCATCTTCCACATTTGCCTCTTGGCCTCA 59
||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 19 ATACCCAAGAACTTCAAAAAAATGCTTAGAGGCATCTTTCACATTTGCCTCTTGGCCTCA 78
Query 60 TTTCTTCTTCTACCGTTCTCCTCTGCTGTACACGATAGTGGCTTCACCGGTGGTACCGAT 119
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 79 TTTCTTCTTCTACCGTTCTCCTCCGCCGTACATGATAGTGGCTTCACCGGTGGTACCGAT 138
Query 120 GCTCCTCCTCCGTGGGACCATAATGTTTCCACACCACCAGAAGCCTCACCATCCCCAACC 179
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 139 GCTCCTCCTCCGTGGGACCATAATGTTTCCCCACCACCAGAAACCGCACCATCCCCAACC 198
Query 180 CCCACCTCGAGTCCTTCTACCGCCTCTCCACCGTCTCCCGGACCAGTGGCTGCACCATCT 239
|||||||||||||| ||||| |||| || || ||||| ||||| |||||||| ||||||
Sbjct 199 CCCACCTCGAGTCCCTCTACAACCTCACCGCCATCTCCTGGACCGGTGGCTGCGCCATCT 258
Query 240 CCGATCAACAACGGCTCTGTCTCTGGAGACATGACATGGTGGTGCAACAAGACTCCACAC 299
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 259 CCGATCAACAACGGCTCTGTCTCCGGGGACATGACATGGTGGTGCAACAAGACTCCACAC 318
Query 300 GCTGAGACATGCAATTACTACTTCCGGAAGAGCTCACAAAACAACATTAACATACGACCA 359
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 319 GCTGAGACATGCAATTACTACTTCCGGAAGAGCTCACAAAACAACATTAACCTACGACCA 378
Query 360 CCAAGGTTCCGGTCCGAGTTCTTACGAATGCTGGTCAAGATAGCACTTGACCAAGCCGTA 419
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 379 CCAAGGTTCCGGTCCGAGTTCTTACGGATGCTGGTCAAGGTAGCACTTGACCAAGCCGTG 438
Query 420 ATCACACACAGTCAAACCGTTAAGTTCGGACCAAGCTGCACCAACAACCAAAGGAAAGCC 479
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 439 ATCACACACAGTCAAACCGTTAAGTTTGGACCGAGCTGCACCAACAACCAAAGGAAAGCC 498
Query 480 GCTTGGTCAGACTGCGTAAAGCTCTTTCAAAACACGGTGACTCAGCTAAACCGAACGCTC 539
|||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||
Sbjct 499 GCTTGGTCAGACTGCGTAAATCTCTTCCAAAACACGGTGGCTCAGCTGAACCGAACGCTC 558
Query 540 AAGGGACTTAACCCGGCGGCTAAGGA-TGATGTCAAGTGTACAGACTTCGACGCACAGAC 598
||||||||||||||||||||| || ||||||||| ||||| |||||||||||||| ||
Sbjct 559 AAGGGACTTAACCCGGCGGCT-TCGAGTGATGTCAAATGTACGGACTTCGACGCACAAAC 617
Query 599 TTGGCTCAGCACGGCTCAAACCAACATTGAAACGTGCCGGTCCGGATCCGAGGATCTTAA 658
||||||||||||||||| |||||||| || |||||||| ||||||||||||||||||||
Sbjct 618 GTGGCTCAGCACGGCTCAGACCAACATCGAGACGTGCCGTTCCGGATCCGAGGATCTTAA 677
Query 659 CGTCTCAGATTTCGTCATGCCGGCGATATCTAACAAGAACTTGTCGGATTTGATTGGAAA 718
|||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 678 CGTCTCGGATTTCGTCATGCCGGTGATATCCAACAAGAACTTGTCGGATTTGATTGGAAA 737
Query 719 CTGCTTGGCCGTCAATGGAGTTCTCATGAAGCAACATAATCATACGACTGCTGCTAACCA 778
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 738 CTGCTTGGCCGTCAATGGAGTTCTCATGAAGCAACATGATCATACGACTACTGCTAACCA 797
Query 779 CAAAGAATACTTCCCAAGCTGGGTTTCAAGACACGAGAGAAAATTACTCGTATCAGCCAC 838
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
Sbjct 798 CAAAGAATACTTCCCAAGCTGGGTTTCAAGACATGAGAGACGATTACTCGTATCAGCCTC 857
Query 839 TTTAGCGAAATCGATG-CCTCACCTAGTGGTGGCACAAGACAGGTCCGGCCATTTCCGGT 897
|||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 858 TTTAGCGAAATCGA-GTCCCCACCTAGTGGTGGCACAAGACAGGTCCGGCCATTTCCGGT 916
Query 898 CGATCCAAGCTGCCATAAACTTCGCAGCAAAAAGGAGATTCAAGTCAAGATTTGTGATAT 957
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 917 CGATCCAAGCTGCCATAAACTTCGCAGCGAGAAGGAGATTCAAGTCAAGATTTGTGATAT 976
Query 958 ATGTGAAGAAAGGTGTTTACCGAGAGAACATTGATGTCGGAAATGATAACCACAACATCA 1017
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 977 ATGTGAAGAAAGGTGTTTACCGAGAGAACATTGATGTCGGCAATGATAACCACAACATCA 1036
Query 1018 TGCTAGTCGGTGATGGCGAGAGAAAAACAATCATCACAAGTGGCCGAAGCGTCCAGCACG 1077
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1037 TGCTCGTCGGAGATGGCGAGAGAAAAACAATCATCACAAGTGGCCGAAGCGTCCAGCATG 1096
Query 1078 GCTACACCACCTATAACTCTGCAACCGCCGGCTTTGGAGGCCAAAGGTTCGTAGCAAAAG 1137
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1097 GCTACACCACCTATAACTCTGCAACCGGCGGCTTTGGAGGCCAAAGGTTTGTAGCAAAAG 1156
Query 1138 ACATGACATTCATCAACACGGCGGGGCCATTACGTGGGCAAGCTGTGGCGGTTCGATCAT 1197
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1157 ACATGACATTCATCAACACGGCCGGGCCATTACGTGGGCAAGCTGTTGCGGTTCGATCAT 1216
Query 1198 CCTCTGACCTCGCTGTTTTCTACCGTGTTGGTATCCATGGCTTCCAAGACACGCTCTACA 1257
||||||||||| |||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 1217 CCTCTGACCTCTCTGTTTTCTACCGTGTCGGTATCCATGGATTCCAAGACACCCTCTACA 1276
Query 1258 TTCACTCACAACGTCAGTTCTTTAGGGAATGTTACATCTCAGGCACCATCGACTTTATCT 1317
| || |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1277 TCCATTCACAACGCCAGTTCTTTAGGGAATGTTATATCTCAGGCACCATCGACTTCATCT 1336
Query 1318 TTGGAAATGCAGCTGTTGTGTTCCAGAACTGCATGATTCTTGTCCGAAGACCTCTCCATG 1377
| ||||||||||||||||| |||||||||||||||||||| ||||| | ||||| ||||
Sbjct 1337 TCGGAAATGCAGCTGTTGTCTTCCAGAACTGCATGATTCTCGTCCGGCGCCCTCTTCATG 1396
Query 1378 GCCAAGCCAACATCATAACCGCACAAGGTCGCGGTGACCCTTTTCAAAATACAGGGATAA 1437
||||||||||||||||||| || |||||||| |||||||||||||| || ||||| ||||
Sbjct 1397 GCCAAGCCAACATCATAACAGCTCAAGGTCGTGGTGACCCTTTTCAGAACACAGGAATAA 1456
Query 1438 CCATCCATAGCTCAAGGATAATCGCGGCATCTGATTTGAAGCCTGTGATTCGAGCTTACA 1497
| |||||||||||||||||||| || || |||||||||||||||||||| ||||||||||
Sbjct 1457 CAATCCATAGCTCAAGGATAATTGCAGCTTCTGATTTGAAGCCTGTGATCCGAGCTTACA 1516
Query 1498 AGACCTATTTAGGCCGACCGTGGCAAGCTTATTCACGCGTCACAATCATGAAGACCTATA 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1517 AGACCTATTTAGGCCGACCGTGGCAAGCTTATTCACGCGTCACAATCATGAAGACCTATA 1576
Query 1558 TAGATAACTCGATCAGCCCCTTGGGATGGTCTCCTTGGTTAAGAGGATCCAATTTTGCTC 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 TAGATAACTCGATCAGCCCCTTGGGATGGTCTCCTTGGTTAAGAGGATCCAATTTTGCTC 1636
Query 1618 TTAATACAGTTTTCTATGGAGAGTATAAAAATTTTGGGCCGGGGTCTTCCACAAGATGGC 1677
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1637 TTAATACAGTTTTCTATGGAGAGTATAAAAATTTTGGACCGGGGTCTTCCACAAGATGGC 1696
Query 1678 GGGTCCGGTGGAAAGGATTCCACGCCATAACGAGCACCGCGGTTGCTTCTCGGTTTACTG 1737
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1697 GGGTCCGGTGGAAAGGATTCCACGCCATAACGAGCACCGCGGTTGCTTCTCGGTTTACGG 1756
Query 1738 TGGGAAGTCTTATCGCCGGCGGCTCATGGTTGCCAGCCACTGGCGTGCCGTTCAAGTCAG 1797
| ||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1757 TTGGAAGCCTTATAGCCGGCGGTTCATGGTTGCCAGCCACTGGCGTGCCTTTCAAGTCAG 1816
Query 1798 GGTTGTGAGGAGAGTCAGCATGTCCTAT 1825
||||||||||||||||||||||||||||
Sbjct 1817 GGTTGTGAGGAGAGTCAGCATGTCCTAT 1844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90310780455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5