BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937481
Length=1613
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47420.1 | Symbols: ATPS3, PS3 | phosphate starvation-induce... 2512 0.0
AT4G17550.1 | Symbols: | Major facilitator superfamily protein... 209 6e-53
> AT3G47420.1 | Symbols: ATPS3, PS3 | phosphate starvation-induced
gene 3 | chr3:17472342-17475258 REVERSE LENGTH=2016
Length=2016
Score = 2512 bits (1360), Expect = 0.0
Identities = 1532/1616 (95%), Gaps = 7/1616 (0%)
Strand=Plus/Plus
Query 1 GAATTGAAGAAC-AGTTTTTTCATGGGTTCTTTAATGCAATCTGAGCCAGAGATGGAGCA 59
||| |||||||| || |||| ||||||||| ||||||||||||| |||||||||||| |
Sbjct 226 GAACTGAAGAACAAG--TTTTGATGGGTTCTCTAATGCAATCTGAACCAGAGATGGAGAA 283
Query 60 AAAACCAG-TAGGGATACGATTCTTGGAACGTATCAAAGGCTCAAAGCTCTCTTACAATG 118
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 284 AAAACC-GATAGGGATACGATTCTTGGAACGTATCAAAGGCTCAAAGCTCTCTTACAGTG 342
Query 119 CTTATCAAGCCATAGTGTTGATCGTGACGTTTCTCGCTTACGCTAGTTATCACGCTGCAA 178
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 343 CTTATCAAGCCATAGTGTTGATCGTGACGTTTCTCGCTTACGCTAGCTATCACGCTGCAA 402
Query 179 GAAAAACAACAAGCATTGTCAAGAGTGCTCTTGATCCTCAATCTCCAGATACAGGACTAA 238
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 403 GAAAAACAACAAGTATTGTCAAAAGTGCTCTTGATCCTCAATCTCCAGATACAGGACTAA 462
Query 239 ACTCACTTCTTTTGAGGTTTACTTCTTTTGGCTCCTCTGTTAAAGAAGAAGGTGGTTGGG 298
|||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 463 ACTCACTTCTTTTGAGATTTACTTCGTTTGGTTCCTCTGTAAAAGAAGAAGGTGGTTGGG 522
Query 299 CTCCGTTT-AATGGTCCGGATGGTACGGTTTTGCTCGGTGAGATCGATGTTGCGTTTCTT 357
|||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 CTCC-TTTCAATGGTCCTGATGGTACGGTTTTGCTCGGTGAGATCGATGTTGCGTTTCTT 581
Query 358 GCGGTTTACGCTTTCGGAATGTATTTTGCTGGACATTTGGGAGATAGGATGAATCTTAGG 417
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 582 GCGGTTTACGCTTTCGGAATGTATTTCGCTGGACATTTGGGGGATAGGATGAATCTTAGG 641
Query 418 ATCTTCTTGACAGTTGGAATGATAGGAACTGGATTGTTTACTTCTCTGTTTGGAGTTGGT 477
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 ATCTTCTTGACTGTTGGAATGATAGGAACTGGATTGTTTACTTCTCTGTTTGGAGTTGGT 701
Query 478 TATTGGGCTAATATTCATAGCTTTTACTATTTCTTGATTATGCAAATGTTGGCTGGATTG 537
||||||| ||| |||||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 702 TATTGGGGTAACATTCATAGCTTTTACTATTTCTTGATAATGCAAATGTTAGCTGGTTTG 761
Query 538 TTTCAATCTTCGGGTTGGCCATCGGTTGTTGCTGTGGTTGGAAACTGGTTTAACAAGAAG 597
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 762 TTTCAATCTTCGGGTTGGCCATCGGTTGTTGCTGTTGTTGGAAACTGGTTTAACAAGAAG 821
Query 598 AAGAGAGGTTTGATTATGGGAATATGGAATGCTCATACTTCTGTTGGGAACATTACTGGC 657
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 822 AAGAGAGGTTTGATCATGGGGATATGGAATGCTCATACTTCTGTTGGGAACATTACTGGC 881
Query 658 TCGTTGATCGCTGCTGCTATGTTGAGATATGGTTGGGGATGGTCTTTTGTTGTTCCTGGT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 TCGTTGATCGCTGCTGCTATGTTGAGATATGGTTGGGGATGGTCTTTTGTTGTTCCTGGT 941
Query 718 GTTATCATTGTGGTGATTGGTTTGGTGAATTTCGCTTTCTTGCCGGTTAATCCAGAGATT 777
||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |
Sbjct 942 GTTATCATTGTGGTGATTGGTTTGGTGAATTACGCTTTCTTGCCTGTTAGTCCAGAGAAT 1001
Query 778 GTTGGAGCAGAGCGAGATGAGGATCTTGATTCGTCGTCTGAGAAGATCGGAAACTCTGTT 837
||||||||||||||||| |||| ||||||||| ||||||||||| |||||||||||||||
Sbjct 1002 GTTGGAGCAGAGCGAGACGAGGTTCTTGATTCTTCGTCTGAGAAAATCGGAAACTCTGTT 1061
Query 838 AATGAGGCATTACTATTGAGCTCGTCGGATTCGGAAACCGATGACAAGAAACGAGCTGTT 897
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 AATGAGCCGTTACTATTGAGCTCGTCGGATTCGGAAACCGATGACAAGAAACGAGCTGTT 1121
Query 898 GGATTCATTGAAGCGTGGAGGATTCCCGGAGTTGCGCCTTTCGCGCTTTGTCTCTTCTTT 957
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1122 GGATTCATTGAAGCGTGGAGGATTCCCGGAGTTGCGCCTTTCGCGCTCTGTCTCTTCTTT 1181
Query 958 GCTAAATTGGTTGCTTACACTTTCCTCTACTGGCTCCCATTTTACGTTAGCCATACAGCG 1017
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 GCTAAGTTGGTCGCTTACACTTTCCTCTACTGGCTCCCATTTTACGTTAGCCATACAGCG 1241
Query 1018 ATTGAAGGCGAGTATTTATCGGACGAAACAGCGGGAAATCTTTCGACAATGTTCGATGTA 1077
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 ATTGAAGGCGAATATTTATCGGACGAAACAGCGGGAAATCTTTCGACAATGTTCGATGTA 1301
Query 1078 GGAGGTGTGGTCGGAGGAATCCTGGCTGGTTACATTTCAGACCGAATTGGTGCAAGAGCG 1137
||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1302 GGAGGTGTGGTTGGTGGAATCATGGCTGGTTACATTTCAGACCGAATTGGTGCAAGAGCT 1361
Query 1138 ATTACGGCTGCGAGTTTCATGTACTGCTCAATCCCAGCTTTGTTCTTCTACCGAAGCTAC 1197
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1362 ATTACGGCTGCGAGTTTCATGTACTGCTCAATTCCAGCTTTGTTCTTCTACCGTAGCTAC 1421
Query 1198 GGACATGTTTCGTTACTAGCCAATGCCTCGCTCATGTTCCTAACCGGAATGTTGGTTAAT 1257
|||||||| |||||| ||||||| || || ||||||||| | ||||| |||||||||||
Sbjct 1422 GGACATGTATCGTTATTAGCCAACGCGTCTCTCATGTTCTTGACCGGGATGTTGGTTAAC 1481
Query 1258 GGACCTTACGCTCTGATCACAACGGCAGTTTCAGCCGATCTTGGAACACACAGCTCATTG 1317
|| ||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1482 GGTCCTTACGCTTTGATTACAACGGCAGTTTCAGCTGATCTTGGAACACACAGCTCGTTG 1541
Query 1318 AAAGGAAACTCGAGAGCTTTGGCTACGGTAACGGCTATAATCGATGGAACGGGATCAGTT 1377
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1542 AAAGGAAACTCGAGAGCTTTGGCTACGGTAACGGCTATTATCGATGGAACGGGATCCGTT 1601
Query 1378 GGTGCTGCGGTTGGGCCATTGCTAACAGGTTACATATCGTCGAAGGGTAGCTGGAGCGCG 1437
|| || ||||| || || || ||||| |||||||||||||||| ||||||||||| ||||
Sbjct 1602 GGAGCGGCGGTCGGACCCTTACTAACGGGTTACATATCGTCGAGGGGTAGCTGGACCGCG 1661
Query 1438 GTTTTCACAATGTTGATGGGAGCTGCGTTTGTGGCTGGACTATTGTTGACGAGGCTGGTT 1497
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 GTTTTCACAATGTTGATGGGAGCTGCGTTTGTGGCTGGACTATTGTTGACGAGGCTGGTA 1721
Query 1498 ATGGCCGAAGTAGCGGAGAAGATAGCTGAGTCGAGACCATCGGAGGAATGTAGATCTCCA 1557
|||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 1722 ATGGCCGAAGTAGCGGAGAAGATAGCTGAGTCTAGGCCATCGGAAGAATGTAGATCTCCG 1781
Query 1558 GTGGACTCCGTCCAAGATCATGTGATGGAAGTGTGATCACCAACTTTGATCGCCAT 1613
||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782 GTGGACTATGTCCAAGATCATGTGATGGAAGTGTGATCACCAACTTTGATCGCCAT 1837
> AT4G17550.1 | Symbols: | Major facilitator superfamily protein
| chr4:9777648-9779738 REVERSE LENGTH=1925
Length=1925
Score = 209 bits (113), Expect = 6e-53
Identities = 312/404 (77%), Gaps = 30/404 (7%)
Strand=Plus/Plus
Query 337 GAGATCGATGTTGCGTTTCTTGCGGT-TTACGCTTTCGGAATGTATTTTGCTGGACATTT 395
||||| ||||| ||||||||||| | |||| || | ||||||||| ||||||| |||||
Sbjct 352 GAGATTGATGTGGCGTTTCTTGC-TTGTTACTCTATAGGAATGTATGTTGCTGGTCATTT 410
Query 396 GGGAGATAGGATGAATCTTAGGA-T-CTTCTTGACAGTT--GGAATGATAGGAACTGGAT 451
||| ||||| || |||| | || | ||| |||| || |||||||| || | ||| |
Sbjct 411 GGGTGATAGTTTGGATCTGA-GATTGTTTC-TGAC--TTGGGGAATGATTGGGAGTGGGT 466
Query 452 TGTTTACTT--CTCTGTTTGG-AGTTGGTTA-TT-GGGCTAATATTCATAGC-TTTT-AC 504
| ||| || | ||||||| | | ||||| || || || |||||| || ||||
Sbjct 467 TCTTT-GTTGGGT-TGTTTGGTA-TGGGTTATTTCTGG--AACATTCAT-GCGTTTTGGT 520
Query 505 TATTTCTTGATTATGCAAATGTTGGCTGGATTGTTTCAATCTTCGGGTTGGCCATCGGTT 564
| ||| ||| ||||||||||| |||||| |||||||| | | || |||||||| |||
Sbjct 521 TCTTT-TTGGTTATGCAAATGGCGGCTGGGTTGTTTCAGGCGACAGGATGGCCATCTGTT 579
Query 565 GTTGCTGTGGTTGGAAACTGGTTTAACAAGAA-GAAGAGAGGT-TTGATTATGGGAATAT 622
|| ||||| ||||| || |||||| || || |||||||||| || || ||||| || |
Sbjct 580 GTGGCTGTTGTTGGGAATTGGTTTGGGAA-AAGGAAGAGAGGTCTT-ATAATGGGGATTT 637
Query 623 GGAATGCTCATACTTCTGTTGGGAACATTACTGGCTCGTTGATCGCTGCTGCTATG-TTG 681
||||||||||||||||||||||||||||| ||| || || || ||||||| | | |||
Sbjct 638 GGAATGCTCATACTTCTGTTGGGAACATTTGTGGTTCTTTAATTGCTGCTGGTGTTCTTG 697
Query 682 AGATATGGTTGGGGATGGTCTTTTGTTGTTCCTGGTGTTATCAT 725
| |||||||||||||||||||||| | | ||||||| || ||||
Sbjct 698 A-ATATGGTTGGGGATGGTCTTTTATAGCTCCTGGTTTTGTCAT 740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79668264915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5