BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937483
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47440.1 | Symbols: TIP5;1 | tonoplast intrinsic protein 5;1... 1221 0.0
> AT3G47440.1 | Symbols: TIP5;1 | tonoplast intrinsic protein 5;1
| chr3:17482025-17483158 FORWARD LENGTH=971
Length=971
Score = 1221 bits (661), Expect = 0.0
Identities = 758/806 (94%), Gaps = 2/806 (0%)
Strand=Plus/Plus
Query 5 TTTTCGAAAGAAATTGATGAGAACAATGATTCCAACATCGTTTTCAAGTAGGTTTCAAGG 64
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 14 TTTTCGAAAGAAATTGATGAGAAGAATGATTCCAACATCGTTTTCAAGTAAGTTTCAAGG 73
Query 65 AGTTA-TAAGTATGAATGCGTTGCGATGTTATGTATCAGAGTTTATCTCTACCTTCTTCT 123
|| || ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 74 AG-TACTAAGTATGAATGCGTTGAGATGTTATGTATCAGAGTTTATCTCAACCTTCTTCT 132
Query 124 TCGTCCTCGCAGCCGTTGGTTCTGTCATGTCTTCAAGGAAACTGATGGCTGGTGATGTGT 183
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 133 TCGTCCTCGCAGCCGTTGGTTCTGTCATGTCTTCAAGGAAATTGATGGCTGGTGATGTGT 192
Query 184 CTGGTCCGTTTGGTGTATTAATACCGGCGATTGCAAATGCGTTTGCGTTATCATCGTCGG 243
|||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 193 CTGGTCCGTTTGGTGTTTTAATACCGGCGATTGCTAATGCGTTGGCGTTATCATCGTCAG 252
Query 244 TTTACATCTCTTGGAACGTCTCTGGTGGTCATGTGAATCCAGCAGTTACGTTTGGGATGG 303
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 253 TTTACATCTCTTGGAACGTCTCTGGTGGTCATGTGAATCCAGCGGTTACGTTTGCGATGG 312
Query 304 CGGTTGCTGGTCGGATTAGTGTTCCAACCGCTATGTTTTATTGGACTTCTCAGATGATTG 363
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 313 CTGTTGCTGGTCGGATTAGCGTTCCAACCGCTATGTTTTATTGGACTTCTCAGATGATTG 372
Query 364 CCTCTGTTATGGCTTGTCTTGTCCTTAAAGTAACTGTCGTTGAACAGCACGTACCAATCT 423
|||||||||||||||| ||||| ||||||||||| ||| | |||||||||||||| || |
Sbjct 373 CCTCTGTTATGGCTTGCCTTGTTCTTAAAGTAACCGTCATGGAACAGCACGTACCGATTT 432
Query 424 ATAAGATTGCCGGAGAAATGACGGGATTTGGAGCATCGGTTCTTGAAGGTGTTTTAGCGT 483
|||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 433 ATAAGATTGCTGGAGAAATGACTGGATTTGGAGCATCTGTTCTTGAAGGTGTTTTAGCTT 492
Query 484 TCGTCTTGGTTTATACTGTGTTTACGGCTAATGATCCGAGACGTGGTCTACCTTTAGCAG 543
|||||||||||||||||||||| ||||||| ||||| |||||||| |||||||||||||
Sbjct 493 TCGTCTTGGTTTATACTGTGTTCACGGCTAGCGATCCCAGACGTGGGCTACCTTTAGCAG 552
Query 544 TGGGACCTATATTCATAGGATTTGTAGCGGGTGCGAATGTTCTAGCTGCTGGTCCATTCT 603
||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||||||||
Sbjct 553 TGGGACCTATATTTATAGGGTTTGTTGCGGGAGCCAATGTTCTAGCCGCTGGTCCATTCT 612
Query 604 CTGGAGGTTCGATGAATCCGGCGTGTGCCTTTGGATCGGCGATGGTTTACGGAAGTTTTA 663
|||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 613 CTGGAGGTTCAATGAATCCTGCGTGTGCCTTTGGGTCGGCGATGGTTTACGGAAGCTTTA 672
Query 664 AGAACCAAGCTGTGTATTGGGTTGGGCCTCTGCTTGGAGGAGCAACAGCTGCGTTAGTGT 723
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 673 AGAACCAAGCTGTGTATTGGGTTGGGCCTCTGCTTGGAGGAGCCACAGCTGCTTTAGTGT 732
Query 724 ATGATAACGTGGTGGTTCCGGCAGAAGATGATCGTGGTTCATCTACTGGAGATGCCATTG 783
|||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||
Sbjct 733 ATGATAACGTGGTGGTCCCTGTAGAAGATGATCGTGGTTCATCTACTGGTGATGCCATTG 792
Query 784 GTGTGTAATGACTTGTTTTTACTGTT 809
|||||||||||||||||| |||||||
Sbjct 793 GTGTGTAATGACTTGTTTATACTGTT 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39484039542
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5