BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937483 Length=811 Score E Sequences producing significant alignments: (Bits) Value AT3G47440.1 | Symbols: TIP5;1 | tonoplast intrinsic protein 5;1... 1221 0.0 > AT3G47440.1 | Symbols: TIP5;1 | tonoplast intrinsic protein 5;1 | chr3:17482025-17483158 FORWARD LENGTH=971 Length=971 Score = 1221 bits (661), Expect = 0.0 Identities = 758/806 (94%), Gaps = 2/806 (0%) Strand=Plus/Plus Query 5 TTTTCGAAAGAAATTGATGAGAACAATGATTCCAACATCGTTTTCAAGTAGGTTTCAAGG 64 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 14 TTTTCGAAAGAAATTGATGAGAAGAATGATTCCAACATCGTTTTCAAGTAAGTTTCAAGG 73 Query 65 AGTTA-TAAGTATGAATGCGTTGCGATGTTATGTATCAGAGTTTATCTCTACCTTCTTCT 123 || || ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 74 AG-TACTAAGTATGAATGCGTTGAGATGTTATGTATCAGAGTTTATCTCAACCTTCTTCT 132 Query 124 TCGTCCTCGCAGCCGTTGGTTCTGTCATGTCTTCAAGGAAACTGATGGCTGGTGATGTGT 183 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 133 TCGTCCTCGCAGCCGTTGGTTCTGTCATGTCTTCAAGGAAATTGATGGCTGGTGATGTGT 192 Query 184 CTGGTCCGTTTGGTGTATTAATACCGGCGATTGCAAATGCGTTTGCGTTATCATCGTCGG 243 |||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| | Sbjct 193 CTGGTCCGTTTGGTGTTTTAATACCGGCGATTGCTAATGCGTTGGCGTTATCATCGTCAG 252 Query 244 TTTACATCTCTTGGAACGTCTCTGGTGGTCATGTGAATCCAGCAGTTACGTTTGGGATGG 303 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 253 TTTACATCTCTTGGAACGTCTCTGGTGGTCATGTGAATCCAGCGGTTACGTTTGCGATGG 312 Query 304 CGGTTGCTGGTCGGATTAGTGTTCCAACCGCTATGTTTTATTGGACTTCTCAGATGATTG 363 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 313 CTGTTGCTGGTCGGATTAGCGTTCCAACCGCTATGTTTTATTGGACTTCTCAGATGATTG 372 Query 364 CCTCTGTTATGGCTTGTCTTGTCCTTAAAGTAACTGTCGTTGAACAGCACGTACCAATCT 423 |||||||||||||||| ||||| ||||||||||| ||| | |||||||||||||| || | Sbjct 373 CCTCTGTTATGGCTTGCCTTGTTCTTAAAGTAACCGTCATGGAACAGCACGTACCGATTT 432 Query 424 ATAAGATTGCCGGAGAAATGACGGGATTTGGAGCATCGGTTCTTGAAGGTGTTTTAGCGT 483 |||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| | Sbjct 433 ATAAGATTGCTGGAGAAATGACTGGATTTGGAGCATCTGTTCTTGAAGGTGTTTTAGCTT 492 Query 484 TCGTCTTGGTTTATACTGTGTTTACGGCTAATGATCCGAGACGTGGTCTACCTTTAGCAG 543 |||||||||||||||||||||| ||||||| ||||| |||||||| ||||||||||||| Sbjct 493 TCGTCTTGGTTTATACTGTGTTCACGGCTAGCGATCCCAGACGTGGGCTACCTTTAGCAG 552 Query 544 TGGGACCTATATTCATAGGATTTGTAGCGGGTGCGAATGTTCTAGCTGCTGGTCCATTCT 603 ||||||||||||| ||||| ||||| ||||| || ||||||||||| ||||||||||||| Sbjct 553 TGGGACCTATATTTATAGGGTTTGTTGCGGGAGCCAATGTTCTAGCCGCTGGTCCATTCT 612 Query 604 CTGGAGGTTCGATGAATCCGGCGTGTGCCTTTGGATCGGCGATGGTTTACGGAAGTTTTA 663 |||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |||| Sbjct 613 CTGGAGGTTCAATGAATCCTGCGTGTGCCTTTGGGTCGGCGATGGTTTACGGAAGCTTTA 672 Query 664 AGAACCAAGCTGTGTATTGGGTTGGGCCTCTGCTTGGAGGAGCAACAGCTGCGTTAGTGT 723 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 673 AGAACCAAGCTGTGTATTGGGTTGGGCCTCTGCTTGGAGGAGCCACAGCTGCTTTAGTGT 732 Query 724 ATGATAACGTGGTGGTTCCGGCAGAAGATGATCGTGGTTCATCTACTGGAGATGCCATTG 783 |||||||||||||||| || | ||||||||||||||||||||||||||| |||||||||| Sbjct 733 ATGATAACGTGGTGGTCCCTGTAGAAGATGATCGTGGTTCATCTACTGGTGATGCCATTG 792 Query 784 GTGTGTAATGACTTGTTTTTACTGTT 809 |||||||||||||||||| ||||||| Sbjct 793 GTGTGTAATGACTTGTTTATACTGTT 818 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39484039542 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5