BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937488

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G47480.1 | Symbols:  | Calcium-binding EF-hand family protei...   902    0.0  


> AT3G47480.1 | Symbols:  | Calcium-binding EF-hand family protein 
| chr3:17496354-17496947 REVERSE LENGTH=594
Length=594

 Score =  902 bits (488),  Expect = 0.0
 Identities = 547/576 (95%), Gaps = 2/576 (0%)
 Strand=Plus/Plus

Query  1    CACACACATAAATTTAGATCAATATGGAGGATTCGTCTCTTCTTAGCCCAATTTCTCTCC  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  20   CACACACATAAATTTAGATCAATATGGAGGATTCGTCTCTTCTTAGCCCAATCTCTCTCC  79

Query  61   TTACCATTGTCATCTTCTTGTTCATTCTCAATCTCATGATGATAATTCAAGActtctctt  120
            | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  80   TCACCATTGTCATCTTCTTATTCATTCTCAATCTCATGATGATAATTCAAGACTTCTCTT  139

Query  121  cttcttttccctatcgtttccatctcttcttctctaatgcctacattctcttcGCCTCAA  180
            |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  140  CTTCTTTTCCCTTTCGTTTCCATCTCTTCTTCTCTAATGCCTACATTCTCTTCACCTCAA  199

Query  181  TAAGAAACAATAGGCAAAATACCGAGCTCCCAATTATAAAGAAA-TTTTTCGTTCTAAAT  239
            |||||||||||| ||||||||||||||||||||| ||||||||| || || || | ||||
Sbjct  200  TAAGAAACAATAAGCAAAATACCGAGCTCCCAATCATAAAGAAAGTTGTT-GTCCCAAAT  258

Query  240  CGAACAAATATCAAAACATCCGTGGAAGAAATCAAGGCGATGATCGATGACTCGGAAGCT  299
            ||| || |||||||||| |||||||||||| |||||||||| ||||||||||||||||||
Sbjct  259  CGAGCAGATATCAAAACGTCCGTGGAAGAAGTCAAGGCGATAATCGATGACTCGGAAGCT  318

Query  300  TTATACGAACGTTTGATAGAAGAAGGAGAAGAGTACTTGCTTGAGAAGAATGAGATGATG  359
            ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  319  TTATACGAATGTTTGATTGAAGAAGGAGAAGAGTACTTGCTTGAGAAGAATGAGATGATG  378

Query  360  GGTAAGGAGATAGTTAAAGAGGCGTTTAGATTATTTGATGAGAATCAAGATGGGTTTATA  419
            ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  379  GGTAAGGAGATAGTTAAAGAGGCGTTTAGGTTATTTGATGAGAATCAGGATGGGTTTATA  438

Query  420  GATGAAAATGAGTTAAAACATGTGTTGTGTTTGTTAGGATACGATGAGTGTACAAAGATG  479
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  439  GATGAAAATGAGTTAAAACATGTGTTGAGTTTGTTAGGATACGATGAGTGTACAAAGATG  498

Query  480  GAGTGTAGGAAGATGATTAAGGTTTTTGATGAGAATAGAGATGGGAAAATCGATTTTTAT  539
            ||||||||||||||| ||||||||| |||||||||||||||||| ||||| |||||||||
Sbjct  499  GAGTGTAGGAAGATGGTTAAGGTTTATGATGAGAATAGAGATGGAAAAATTGATTTTTAT  558

Query  540  GAGTTTGTGAAGCTCATAGATAAGAGCTTTTGGTGA  575
            |||||||||||||| ||||| |||||||||| ||||
Sbjct  559  GAGTTTGTGAAGCTTATAGAGAAGAGCTTTTCGTGA  594



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28633463790


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5