BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937492
Length=1258
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47520.1 | Symbols: MDH | malate dehydrogenase | chr3:175132... 1788 0.0
> AT3G47520.1 | Symbols: MDH | malate dehydrogenase | chr3:17513274-17515041
FORWARD LENGTH=1557
Length=1557
Score = 1788 bits (968), Expect = 0.0
Identities = 1147/1234 (93%), Gaps = 9/1234 (1%)
Strand=Plus/Plus
Query 14 AACAA-AAATGGCTGTAGCAACATCAGCAGCATCTCTGTTTTCAACTGTTTCTTCTTAC- 71
||||| ||||||| |||||||| |||| ||||||||||||||||||||||| | |
Sbjct 165 AACAAGAAATGGCAACAGCAACAT---CAGCTTCTCTGTTTTCAACTGTTTCTTCAT-CT 220
Query 72 TCCTCTAAACCCAGTTCCTTACCTCATTCAAGACTCCAAGCTGTGAAATTTAACTCACTC 131
| ||| ||| | || ||| |||| ||||||||||||||| |||||||||| |||||| ||
Sbjct 221 TACTCCAAAGCTAGCTCCATACCACATTCAAGACTCCAATCTGTGAAATTCAACTCAGTC 280
Query 132 CCTAGCTTCACCGGTCTCAGATCAACAACGTCTCTCATCTCTGGATCTGATGCCTCTTCC 191
||||||||||||||||||| |||||| | ||||||||||| ||||||||| ||||||||
Sbjct 281 CCTAGCTTCACCGGTCTCAAATCAAC--C-TCTCTCATCTCCGGATCTGATTCCTCTTCC 337
Query 192 TTAACCAAGACTCTACGAGGTTCCGTAACGAAAGCTCAAACATCTGACAAGAAGCCTTAC 251
||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 338 TTAGCCAAGACTCTACGCGGTTCCGTAACGAAAGCACAAACATCTGACAAGAAGCCTTAC 397
Query 252 GGATTCAAAATCAATGCTTCATACAAAGTAGCTGTTCTTGGTGCTGCTGGTGGTATAGGT 311
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 GGATTCAAAATCAACGCTTCATACAAAGTAGCTGTTCTTGGTGCTGCTGGTGGTATAGGT 457
Query 312 CAGCCTTTATCACTTCTCATCAAGATGTCTCCGTTAGTTTCGACGCTTCATCTTTACGAT 371
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 458 CAGCCTTTATCACTTCTCATCAAGATGTCTCCGTTAGTCTCTACGCTTCATCTTTACGAT 517
Query 372 ATTGCGAATGTTAAAGGAGTTGCTGCTGATTTGAGTCATTGTAATACTCCTTCTCAAGTT 431
|| || |||||||||||||||||||||||| | ||||||||||| |||||||||||||||
Sbjct 518 ATCGCCAATGTTAAAGGAGTTGCTGCTGATCTAAGTCATTGTAACACTCCTTCTCAAGTT 577
Query 432 CGTGATTTCACCGGTCCTTCTGAGTTAGCTGATTGTTTGAAAGATGTTAATGTTGTTGTT 491
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 578 CGTGATTTCACTGGTCCTTCTGAGTTAGCTGATTGTTTGAAAGATGTTAACGTTGTTGTC 637
Query 492 ATCCCTGCTGGTGTACCGAGGAAACCGGGTATGACTCGTGATGATCTTTTCAACATCAAT 551
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 638 ATCCCTGCTGGTGTGCCGAGGAAACCCGGTATGACTCGTGACGATCTTTTCAACATCAAT 697
Query 552 GCCAACATTGTGAAGAATCTTGTTGAAGCTGTTGCTGATAACTGTCCTAATGCTTTTATT 611
||||| ||||| |||| ||||||||||||||||||||| || || ||||||||||| |||
Sbjct 698 GCCAATATTGTCAAGACTCTTGTTGAAGCTGTTGCTGAGAATTGCCCTAATGCTTTCATT 757
Query 612 CACATTATTAGTAACCCGGTTAACTCTACCGTACCGATTGCTGCTGAAGTGTTGAAAAAG 671
|| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 758 CATATTATTAGTAACCCGGTTAACTCTACGGTACCTATTGCTGCTGAAGTGTTGAAGAAG 817
Query 672 AAAGGTGTTTATGATCCTAAGAAGTTGTTTGGTGTCACTACGTTGGATGTTGTGAGGGCT 731
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 818 AAAGGTGTTTATGATCCTAAGAAGCTGTTTGGTGTCACTACTTTGGATGTTGTGAGGGCT 877
Query 732 AACACTTTTGTTTCTCAGAAAAAGAACCTTAAGCTTATTGATGTGGATGTTCCGGTTATT 791
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 878 AACACTTTTGTTTCTCAGAAGAAGAATCTTAAGCTTATTGATGTTGATGTTCCGGTTATT 937
Query 792 GGTGGACATGCTGGAATCACCATTTTGCCTCTTCTCTCGAAAACAAAACCGTCTGTCAAC 851
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 938 GGTGGACATGCTGGAATCACCATTTTGCCTCTCCTCTCGAAGACAAAACCGTCTGTTAAC 997
Query 852 TTTACCGATGAAGAGATCCAAGAGCTCACTGTTAGGATTCAGAACGCTGGAACTGAGGTT 911
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 998 TTTACTGATGAAGAGATCCAAGAGCTCACTGTTAGGATTCAGAACGCTGGTACTGAGGTT 1057
Query 912 GTGGATGCTAAGGCAGGTGCAGGTTCAGCTACTTTGTCAATGGCATATGCTGCAGCAAGA 971
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 1058 GTTGATGCTAAGGCAGGTGCAGGTTCAGCTACTTTGTCAATGGCTTATGCTGCTGCTAGA 1117
Query 972 TTTGTCGAGTCATCTCTCCGTGCTCTTGATGGAGACGGAGATGTCTATGAGTGCTCATTT 1031
||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1118 TTTGTAGAGTCATCTCTTCGTGCTCTTGATGGAGACGGAGATGTCTACGAGTGCTCGTTT 1177
Query 1032 GTGGAGTCGACTCTGACTGATCTTCCTTTCTTTGCATCGCGGATCAAGCTTGGGAAGAAC 1091
|||||||||||||||||||||||||||||||||||||| ||| | ||| | |||||||||
Sbjct 1178 GTGGAGTCGACTCTGACTGATCTTCCTTTCTTTGCATCACGGGTTAAGATAGGGAAGAAC 1237
Query 1092 GGTCTTGAAGCTGTGATTGAGTCAGACCTTCAGGGGTTAACTGAGTATGAGCAGAAAGCA 1151
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1238 GGTCTTGAAGCTGTGATTGAGTCAGACCTTCAGGGATTGACTGAGTATGAGCAGAAAGCA 1297
Query 1152 CTAGAAGCTCTTAAACCAGAACTGAAAGCTAGCATCGAGAAGGGTGTCGCATTTGCAAAC 1211
|||||||||||||| |||| ||||||||||||| || |||||||||||||||||||||
Sbjct 1298 CTAGAAGCTCTTAAGGTAGAATTGAAAGCTAGCATTGACAAGGGTGTCGCATTTGCAAAC 1357
Query 1212 AAACCAGCTGCTGCAGCAGCTAACTAGATTGCAA 1245
||||||||||||||||||||||||||||| ||||
Sbjct 1358 AAACCAGCTGCTGCAGCAGCTAACTAGATCGCAA 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61847071440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5