BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937500
Length=874
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47090.1 | Symbols: | Leucine-rich repeat protein kinase fa... 1129 0.0
AT3G47570.1 | Symbols: | Leucine-rich repeat protein kinase fa... 1125 0.0
AT3G47580.1 | Symbols: | Leucine-rich repeat protein kinase fa... 1099 0.0
AT5G39390.1 | Symbols: | Leucine-rich repeat protein kinase fa... 329 2e-89
> AT3G47090.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr3:17341512-17344645 REVERSE LENGTH=3030
Length=3030
Score = 1129 bits (611), Expect = 0.0
Identities = 776/857 (91%), Gaps = 6/857 (1%)
Strand=Plus/Plus
Query 1 TTGTTGCAGTGAAAGTTCTAAACATGCAAAGACGTGGAGCGATGAAGAGCTTTATGGCAG 60
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2177 TTGTTGCAGTGAAAGTTCTAAACATGCAGAGACGTGGAGCTATGAAGAGCTTTATGGCAG 2236
Query 61 AATGTGAATCCTTGAAGGACATAAGACATCGTAATCTTGTGGAACTATTGACAGCTTGCG 120
|||||||||| |||||||| ||||| ||||||||||| ||| ||||||||||||||||||
Sbjct 2237 AATGTGAATCTTTGAAGGATATAAGGCATCGTAATCTCGTGAAACTATTGACAGCTTGCG 2296
Query 121 CTAGTATTGATTTCCAAGGTAACGAATTCAGAGCTCTTATATATGAGTTCATGCCGAATG 180
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 2297 CTAGTATTGATTTCCAAGGTAACGAATTCAGAGCTCTCATCTATGAGTTCATGCCGAATG 2356
Query 181 GAAGCTTGGATATGTGGTTGCACCCAGAGGAAGTGGAAGAGATTCGTAGGCCCTCAAGAA 240
|||| ||||||| ||| |||||||||||||||| |||||||||| ||||||||||||||
Sbjct 2357 GAAGTTTGGATAAATGGCTGCACCCAGAGGAAGTCGAAGAGATTCATAGGCCCTCAAGAA 2416
Query 241 CCTTGACACTTCTTGAAAGGCTAAACATTGCCATAGACGTGGCTTCTGTTTTAGACTATC 300
| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 2417 CTTTGACACTTCTTGAAAGGCTTAACATTGCCATAGACGTGGCTTCTGTTTTGGACTATC 2476
Query 301 TTCATGTTCACTGTCATGAACCTATAGCTCATTGCGATCTTAAGCCAAGTAACACACTTC 360
||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct 2477 TTCATGTTCACTGTCATGAGCCTATAGCTCATTGCGATCTTAAGCCAAGCAACATACTTC 2536
Query 361 TAGACGATGATCTAACAGCTCATGTTAGCGACTTTGGTTTGGCTCGTCTTCTCCTCAAAT 420
| |||||||||||||| || |||||||||||||| ||| | |||||||||||||||||||
Sbjct 2537 TCGACGATGATCTAACTGCCCATGTTAGCGACTTCGGTCTCGCTCGTCTTCTCCTCAAAT 2596
Query 421 TTGACCAGGAGTCCTTCTTCAATCAACTAAGCTCGGCCGGTGTGAGAGGAACCATCGGCT 480
| ||||||||||| |||||||| ||||||||||| || ||||| ||||||||||| || |
Sbjct 2597 TCGACCAGGAGTCTTTCTTCAACCAACTAAGCTCAGCTGGTGTTAGAGGAACCATTGGGT 2656
Query 481 ATGCCGCACCAGAATATGGAATGGGAGGGCAGCCGTCAATACATGGTGATGTGTATAGCT 540
|||||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||
Sbjct 2657 ATGCCGCACCAGAATATGGAATGGGAGGACAACCGTCAATACACGGTGATGTATATAGCT 2716
Query 541 TTGGGGTTCTCCTTTTGGAAATGTTCACTGGAAAAAGACCAACCAATGAGTTATTTGGTG 600
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2717 TTGGGGTTCTCGTTTTGGAAATGTTCACTGGAAAAAGACCAACCAATGAGTTATTTGGAG 2776
Query 601 -ACAACTTTACCCTCCACAGCTACACCAAATCGGCATTGCCGGAAAGAGTATTGGAGATT 659
| ||||||||||| ||||||||||||| |||| ||||| |||||||| ||||| |||
Sbjct 2777 GA-AACTTTACCCTGAACAGCTACACCAAGGCGGCCTTGCCAGAAAGAGTTTTGGACATT 2835
Query 660 GCAGACAAGTCGATTCTTCACAATGGTCTCAGAGTCGGTTTCCGTATTGCT-GAGTGCTT 718
|||||||| ||||||||||| | |||||||||||| ||||||| | | || ||||||||
Sbjct 2836 GCAGACAAATCGATTCTTCATAGTGGTCTCAGAGTTGGTTTCCCTGTA-CTTGAGTGCTT 2894
Query 719 GACATTGG-TTTTGGAGGTAGGACTTAGGTGCTGTGAAGAATCTCCTATGAACCGGTTGG 777
|| | || ||||||| || |||||||| || |||||||||||||| ||||||||||||
Sbjct 2895 GAAAG-GGATTTTGGATGTGGGACTTAGATGTTGTGAAGAATCTCCGCTGAACCGGTTGG 2953
Query 778 CAACGAGTGAAGTTGCAAAGGAGTTGATCACAATCAAAGAGAGGTTCTTTAAAACCAGAA 837
|||||||||||| || |||||||| ||| |||||| |||||| |||||||||||| | |
Sbjct 2954 CAACGAGTGAAGCAGCCAAGGAGTTAATCTCAATCAGAGAGAGATTCTTTAAAACCCGGA 3013
Query 838 GGACAGCTAGACGTTGA 854
| ||||| |||||||||
Sbjct 3014 GAACAGCCAGACGTTGA 3030
> AT3G47570.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr3:17527507-17530929 FORWARD LENGTH=3318
Length=3318
Score = 1125 bits (609), Expect = 0.0
Identities = 792/880 (90%), Gaps = 13/880 (1%)
Strand=Plus/Plus
Query 1 TTGTTGCAGTGAAAGTTCTAAACATGCAAAGACGTGGAGCGATGAAGAGCTTTATGGCAG 60
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 2284 TTGTTGCAGTGAAAGTTTTAAACATGCAGAGACGTGGAGCGATGAAGAGCTTTATGGCAG 2343
Query 61 AATGTGAATCCTTGAAGGACATAAGACATCGTAATCTTGTGGAACTATTGACAGCTTGCG 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2344 AATGTGAATCCTTGAAGGACATAAGACATCGTAATCTTGTGAAACTATTGACAGCTTGTT 2403
Query 121 CTAGTATTGATTTCCAAGGTAACGAATTCAGAGCTCTTATATATGAGTTCATGCCGAATG 180
| ||||||||||| ||||| || ||||| |||||||| || |||||||||||||| ||||
Sbjct 2404 CGAGTATTGATTTTCAAGGAAATGAATTTAGAGCTCTCATCTATGAGTTCATGCCTAATG 2463
Query 181 GAAGCTTGGATATGTGGTTGCACCCAGAGGAAGTGGAAGAGATTCGTAGGCCCTCAAGAA 240
|||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2464 GAAGTTTAGATATGTGGCTGCACCCAGAGGAAGTGGAAGAGATTCATAGGCCCTCAAGAA 2523
Query 241 CCTTGACACTTCTTGAAAGGCTAAACATTGCCATAGACGTGGCTTCTGTTTTAGACTATC 300
| ||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 2524 CTTTGACCCTTCTTGAAAGGCTTAACATTGCCATAGACGTGGCTTCTGTTTTGGATTATC 2583
Query 301 TTCATGTTCACTGTCATGAACCTATAGCTCATTGCGATCTTAAGCCAAGTAACA-CACTT 359
| |||||||| |||||||||||||||||||||||||||||||||||||| ||| | |||
Sbjct 2584 TCCATGTTCATTGTCATGAACCTATAGCTCATTGCGATCTTAAGCCAAGCAACGTC-CTT 2642
Query 360 CTAGACGATGATCTAACAGCTCATGTTAGCGACTTTGGTTTGGCTCGTCTTCTCCTCAAA 419
||||||||||||||||| || |||||||| ||||||||| | ||||||||||||||||||
Sbjct 2643 CTAGACGATGATCTAACCGCCCATGTTAGTGACTTTGGTCTAGCTCGTCTTCTCCTCAAA 2702
Query 420 TTTGACCAGGAGTCCTTCTTCAATCAACTAAGCTCGGCCGGTGTGAGAGGAACCATCGGC 479
|| ||| |||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 2703 TTCGACGAGGAGTCCTTCTTCAACCAACTAAGCTCAGCCGGTGTTAGAGGAACCATCGGC 2762
Query 480 TATGCCGCACCAGAATATGGAATGGGAGGGCAGCCGTCAATACATGGTGATGTGTATAGC 539
|||||||||||||| |||||| ||||||| ||||| || ||| |||||||||| |||||
Sbjct 2763 TATGCCGCACCAGAGTATGGAGTGGGAGGACAGCCATCTATAAATGGTGATGTATATAGT 2822
Query 540 TTTGGGGTTCTCCTTTTGGAAATGTTCACTGGAAAAAGACCAACCAATGAGTTATTTGGT 599
|||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 2823 TTTGGGATTCTCCTTTTAGAAATGTTCACTGGAAAAAGACCAACCAATGAGCTATTTGGA 2882
Query 600 G-ACAACTTTACCCTCCACAGCTACACCAAATCGGCATTGCCGGAAAGAGTATTGGAGAT 658
| | ||||||||||| |||||||||| || |||||||||||||||||| ||||||| ||
Sbjct 2883 GGA-AACTTTACCCTGAACAGCTACACTAAGTCGGCATTGCCGGAAAGAATATTGGACAT 2941
Query 659 TGCAGAC-AAGTCGATTCTTCACAATGGTCTCAGAGTCGGTTTCCGTATTGCTGAGTGCT 717
|| |||| || || |||||||||| |||||||||||||||||||| | ||| ||||||||
Sbjct 2942 TGTAGACGAA-TCAATTCTTCACATTGGTCTCAGAGTCGGTTTCCCTGTTGTTGAGTGCT 3000
Query 718 TGACATTGGTTTTGGAGGTAGGACTTAGGTGCTGTGAAGAATCTCCTATGAACCGGTTGG 777
||||| ||||||| ||||| || |||||||| |||||||||||||| |||||||||||||
Sbjct 3001 TGACAATGGTTTTTGAGGTGGGCCTTAGGTGTTGTGAAGAATCTCCGATGAACCGGTTGG 3060
Query 778 CAACGAGTGA-AGTTG-CAAAGGAGTTGATCACAATCAAAGAGAGGTTCTTTAAAACCAG 835
|||||||| | ||| | ||| |||||||||| |||||| |||||||||||||||| ||||
Sbjct 3061 CAACGAGT-ATAGTCGTCAA-GGAGTTGATCTCAATCAGAGAGAGGTTCTTTAAAGCCAG 3118
Query 836 AAGGAC-AGCTAGACGTTGAAGTGTTATGGTTTTGCCTAC 874
|| || | || | |||||||||||| |||||||| ||||
Sbjct 3119 TAGAACGA-CTTGGCGTTGAAGTGTT-TGGTTTTGTCTAC 3156
> AT3G47580.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr3:17532648-17536059 FORWARD LENGTH=3324
Length=3324
Score = 1099 bits (595), Expect = 0.0
Identities = 787/880 (89%), Gaps = 11/880 (1%)
Strand=Plus/Plus
Query 1 TTGTTGCAGTGAAAGTTCTAAACATGCAAAGACGTGGAGCGATGAAGAGCTTTATGGCAG 60
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 2222 TTGTTGCAGTGAAAGTTCTAAACATGCAGAGACGTGGAGCTATGAAGAGCTTTATGGCAG 2281
Query 61 AATGTGAATCCTTGAAGGACATAAGACATCGTAATCTTGTGGAACTATTGACAGCTTGCG 120
|||||||||||||||| |||| ||| ||||||||||||||| || || ||||||||||||
Sbjct 2282 AATGTGAATCCTTGAAAGACACAAGGCATCGTAATCTTGTGAAATTACTGACAGCTTGCG 2341
Query 121 CTAGTATTGATTTCCAAGGTAACGAATTCAGAGCTCTTATATATGAGTTCATGCCGAATG 180
|||||| |||||||||||| |||||||||||||| ||||| ||||||| | |||||||||
Sbjct 2342 CTAGTACTGATTTCCAAGGAAACGAATTCAGAGCGCTTATCTATGAGTACTTGCCGAATG 2401
Query 181 GAAGCTTGGATATGTGGTTGCACCCAGAGGAAGTGGAAGAGATTCGTAGGCCCTCAAGAA 240
||||| ||||||||||| |||||||||||||||| |||||||| ||||||||| || |||
Sbjct 2402 GAAGCGTGGATATGTGGCTGCACCCAGAGGAAGTCGAAGAGATACGTAGGCCCCCACGAA 2461
Query 241 CCTTGACACTTCTTGAAAGGCTAAACATTGCCATAGACGTGGCTTCTGTTTTAGACTATC 300
|||||||||||||||||||||| || |||| ||||||||||||||||||||| |||||||
Sbjct 2462 CCTTGACACTTCTTGAAAGGCTTAATATTGTCATAGACGTGGCTTCTGTTTTGGACTATC 2521
Query 301 TTCATGTTCACTGTCATGAACCTATAGCTCATTGCGATCTTAAGCCAAGTAAC-ACACTT 359
||||||||||||||||||| |||||||||||||||||||| |||||||| ||| | |||
Sbjct 2522 TTCATGTTCACTGTCATGAGCCTATAGCTCATTGCGATCTCAAGCCAAGCAACGTC-CTT 2580
Query 360 CTAGACGATGATCTAACAGCTCATGTTAGCGACTTTGGTTTGGCTCGTCTTCTCCTCAAA 419
||||| |||||| | || || |||||||| || |||||| ||||||| ||||| ||||||
Sbjct 2581 CTAGAAGATGATTTGACCGCCCATGTTAGTGATTTTGGTCTGGCTCGGCTTCTACTCAAA 2640
Query 420 TTTGACCAGGAGTCCTT-CTTCAATCAACTAAGCTCGGCCGGTGTGAGAGGAACCATCGG 478
|| ||| ||||||| || ||| || ||||||||||| ||||| || ||||||||||||||
Sbjct 2641 TTCGACAAGGAGTCATTCCTT-AACCAACTAAGCTCAGCCGGAGTTAGAGGAACCATCGG 2699
Query 479 CTATGCCGCACCAGAATATGGAATGGGAGGGCAGCCGTCAATACATGGTGATGTGTATAG 538
|||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 2700 CTATGCCGCACCAGAATATGGAATGGGAGGACAACCATCAATACATGGTGATGTGTATAG 2759
Query 539 CTTTGGGGTTCTCCTTTTGGAAATGTTCACTGGAAAAAGACCAACCAATGAGTTATTTGG 598
|||||||||||||||||| ||||||||||| || ||| ||||||| |||||||||||||
Sbjct 2760 CTTTGGGGTTCTCCTTTTAGAAATGTTCACCGGGAAACGACCAACTGATGAGTTATTTGG 2819
Query 599 TG-ACAACTTTACC-CTCCACAGCTACACCAAATCGGCATTGCCGGAAAGAGTATTGGAG 656
| | || |||| | || || ||||||||||| | || ||||| |||| |||||| ||
Sbjct 2820 GGGA-AA-TTTAACACTACATAGCTACACCAAGTTAGCGTTGCCAGAAAAAGTATTCGAA 2877
Query 657 ATTGCAGACAA-GTCGATTCTTCACAATGGTCTCAGAGTCGGTTTCCGTATTGCTGAGTG 715
||||||||||| | |||||||||||| |||||| ||||| |||||||||| |||||||||
Sbjct 2878 ATTGCAGACAAAG-CGATTCTTCACATTGGTCTTAGAGTTGGTTTCCGTACTGCTGAGTG 2936
Query 716 CTTGACATTGGTTTTGGAGGTAGGACTTAGGTGCTGTGAAGAATCTCCTATGAACCGGTT 775
||||||| ||||||||||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 2937 CTTGACACTGGTTTTGGAGGTGGGACTTAGGTGCTGTGAAGAATATCCTACGAACCGGTT 2996
Query 776 GGCAACGAGTGAAGTTGCAAAGGAGTTGATCACAATCAAAGAGAGGTTCTTTAAAACCAG 835
||||||||||||||| ||||| ||||||||| |||||| ||| |||||||||||||||||
Sbjct 2997 GGCAACGAGTGAAGTCGCAAAAGAGTTGATCTCAATCAGAGAAAGGTTCTTTAAAACCAG 3056
Query 836 AAGGACAGCTAGACGTTGAAGTGTT-ATGGTTTTGCCTAC 874
||| ||| |||||||||||||| || ||||||||||||||
Sbjct 3057 AAGAACACCTAGACGTTGAAGTTTTTATGGTTTTGCCTAC 3096
> AT5G39390.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr5:15763715-15765469 REVERSE LENGTH=1509
Length=1509
Score = 329 bits (178), Expect = 2e-89
Identities = 479/621 (77%), Gaps = 34/621 (5%)
Strand=Plus/Plus
Query 35 TGGAGCGATGAAGAGCTTTATGGCAGAATGTGAATCCTT-GAAGGACATAAGACATCGTA 93
|||||| | || |||||||| || ||||||||||| || |||| || || || ||||
Sbjct 735 TGGAGCAACAAAAAGCTTTATAGCGGAATGTGAATCTTTCAAAGG-TATTAGGCACCGTA 793
Query 94 ATCTTGTGGAACT-ATTGACAGCTTGCGCTAGTATTGATTTCCAAGGTAACGAATTCAGA 152
| |||| | |||| | | |||| |||| | || |||||| |||||| || || ||||||
Sbjct 794 ACCTTGCGAAACTGA-TAACAGTTTGCTCAAGCCTTGATTCCCAAGGAAATGATTTCAGA 852
Query 153 GCTCTTA-TATATGAGTTCATGCCGAATGGAAGCT-TGGATATGTGGTTGCACCCAGAGG 210
||| ||| | |||||||||||||| || ||||| | | ||||||||| | || ||||| |
Sbjct 853 GCT-TTAGTCTATGAGTTCATGCCAAAAGGAAG-TCTAGATATGTGGCTACAGCCAGAAG 910
Query 211 AAGTGG-AAGAG-ATTCGTAGGCCCTCAAGAACCTTGACACTT-CTTGA-AAGGCTAAAC 266
| ||| ||| | | | | | |||||| | || ||| || | || || | | |||
Sbjct 911 ATTTGGAAAGTGCAAAC--AATCACTCAAGGTCTTTAACATTTGC-AGAGAAAG-TCAAC 966
Query 267 ATTGCCATAGACGTGGCTTCTGTTTTAGACTATCTTCATGTTCACTGTCATGAACCTATA 326
|| || ||||| |||||||||| ||| || ||||| |||||| | |||||||| ||| |
Sbjct 967 ATAGCAATAGATGTGGCTTCTGCTTTGGAGTATCTGCATGTTTATTGTCATGACCCTGTC 1026
Query 327 GCTCATTGCGATCTTAAGCCAAGTAACACACTTCTAGACGATGATCTAACAGCTCATGTT 386
|||||||| ||| |||||||||| ||| ||||||||||||||| | || |||||||||
Sbjct 1027 GCTCATTGTGATATTAAGCCAAGCAACGTTCTTCTAGACGATGATTTGACGGCTCATGTT 1086
Query 387 AGCGACTTTGGTTTGGCTCGTCTTCTCCTCA-AATTT-GACCAGGAGTCC-TTCTTCAAT 443
|| ||||||||||||||||| | || | | | ||||| || || | || ||| | ||
Sbjct 1087 AGTGACTTTGGTTTGGCTCGGC-TC-CTTTATAATTTCGATGAGAAAACCTTTC-TAAAC 1143
Query 444 CAACTAAGCTCGGCCGGTGTGAGAGGAACCATCGGCTATGCCGCACCAGAATATGGAATG 503
|| | || || |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1144 CAGTTCAGTTCTGCCGGTGTGAGAGGTACCATTGGCTATGCCGCACCAGAATATGGAATG 1203
Query 504 GGAGGGCAG-CCGTCAATACATGGTGATGTGTATAGCTTTGGGGTTCTCCTTTTGGAAAT 562
||| | || || |||||||| || ||||| || |||||||| ||| | |||||||| ||
Sbjct 1204 GGAAG-CAAACCATCAATACAAGGAGATGTTTACAGCTTTGGAGTTTTACTTTTGGAGAT 1262
Query 563 GTTCACTGG-AAAAAGACCAACCA-ATGAGTT-ATTTGGTGACAACTT-TACCCTCCACA 618
||||||||| ||||| ||| || | | | || |||||||| | || || |||||||
Sbjct 1263 GTTCACTGGGAAAAA-ACCGAC-AGACAA-TTCATTTGGTGGCGG-TTATAACCTCCACG 1318
Query 619 GCTACACCAAA-TCGGCATTG 638
||||||| ||| |||| ||||
Sbjct 1319 GCTACAC-AAAGTCGGTATTG 1338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42648790803
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5