BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937512
Length=755
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47670.1 | Symbols: | Plant invertase/pectin methylesterase... 1033 0.0
> AT3G47670.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr3:17574785-17575880 REVERSE
LENGTH=1096
Length=1096
Score = 1033 bits (559), Expect = 0.0
Identities = 706/773 (91%), Gaps = 26/773 (3%)
Strand=Plus/Plus
Query 4 CGATCAAAAAACGATTA----TCAATGGAATCAATCAACACCTTGAAAGGCTACGACAAA 59
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 116 CGATCAAAAAACCATTACCCTTCAATGGAATCAATCAACACCTTGAAAGGCTACGACAAA 175
Query 60 ATATCCGACCAAGAAAACCAAATTCATCATCATCAT-A--CTCCACTTCCAAAACCATCT 116
|||||||||||||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct 176 GTATCCGACCAAGAAAACCAAATCCATCATCATCATCATTCTCCACTTCCAAAACCATCA 235
Query 117 TC-T---C--GTAAAACCCTAATCGCCACCGTCTCCGTCGTATCTCTCCTCTTAATCCTC 170
|| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 236 TCATTTTCCCGTAAAACCCTAATCGCCACCGGCTCCGTCGTATCTCTCCTCTTAATCCTC 295
Query 171 GCCGTCGTCGCTTTAACCGCCGGAGTTTTCACTCA-TCCTCCTCCACACCATCCTCCCAT 229
|||||||||||||||||||||||| ||||||||| || ||||||||||||||| || ||
Sbjct 296 TCCGTCGTCGCTTTAACCGCCGGAGCTTTCACTCACTC-TCCTCCACACCATCCACCTAT 354
Query 230 CTCCTCCGCTTCACTCAAGTCAATCTGCGCCGTGACTCGTTACCCAGAGACCTGTTTCAA 289
||||||||| || ||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 355 CTCCTCCGCCTCTCTCAAGTCACTATGCTCCGTGACTCGTTACCCAGAGACCTGTTTCAA 414
Query 290 -TGCTCTATCTTCTTCTCTCAACGAATCAGATTCAAAACTTAACCCTGAATCAATCCTCG 348
| ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 415 CT-CTCTATCATCTTCTCTCAACGAATCTGATTCAAAGCTTAACCCTGAATCAATCCTCG 473
Query 349 AGCTTTCTCTTCGTGTCGCTGTTAAAAATCTCTCAAACCTCTCTATCTCTTTCCGATCTA 408
||||||||||||| ||||||| |||| | |||||||||||||||||||||||||||| |
Sbjct 474 AGCTTTCTCTTCGAGTCGCTGCTAAAGAGATCTCAAACCTCTCTATCTCTTTCCGATCAA 533
Query 409 TCAACGATATGCCTGAAGACGCAGCGGTTGGTGATTGTGTGAAGCTTTACACCGACGCGG 468
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 534 TCAACGATATGCCTGAGGACGCGGCGGTTGGTGATTGTGTGAAGCTTTACACCGACGCGT 593
Query 469 TGAGTCAACTCAACGATTCGATTACAGAGATTGAGA-AAGAGAAGAAGAAAGGAGCGAAT 527
||||||||||||||||||||||||||||||| |||| || ||||||||||||| | ||||
Sbjct 594 TGAGTCAACTCAACGATTCGATTACAGAGATCGAGAGAA-AGAAGAAGAAAGGTGGGAAT 652
Query 528 --T-GGTTGGCGAAACAAGTCGTCGGAGATGTTAAGACTTGGATTAGCGCCGCCATGACT 584
| ||||| || || |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 653 AATTGGTTGACGGAAGAAGTCGTCGGAGATGTTAAGACTTGGATCAGCGCCGCCATGACT 712
Query 585 GACGGTGAGACTTGTTCCGATGGGATTGAAGAAATGGGAACAATTGTTGGG-AATGAGAT 643
||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 713 GACGGTGAGACTTGTTCCGATGGAATTGAAGAAATGGGAACAATTGT-GGGTAATGAGAT 771
Query 644 TAAGAAAGAGATGGAGATGGCGAATCAGATGATGAGTATTAGCTTGGCCATTGTTAGCCA 703
|||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 772 CAAGAAAAAGATGGAGATGGCTAATCAGATGATGAGTATTAGTTTGGCCATTGTTAGTCA 831
Query 704 AATGAAGAAGCTTTGGTTGAT-TCTTCACTAAACCAATCATAAAGGTTTGAAC 755
|||||||||||||| |||||| | |||||||||||||||||||||||| ||||
Sbjct 832 AATGAAGAAGCTTTTGTTGATAT-TTCACTAAACCAATCATAAAGGTTGGAAC 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36670927310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5