BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937524
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47800.1 | Symbols: | Galactose mutarotase-like superfamily... 1796 0.0
> AT3G47800.1 | Symbols: | Galactose mutarotase-like superfamily
protein | chr3:17634810-17637204 FORWARD LENGTH=1444
Length=1444
Score = 1796 bits (972), Expect = 0.0
Identities = 1058/1100 (96%), Gaps = 4/1100 (0%)
Strand=Plus/Plus
Query 17 aaaaaaTGGTGAAGAAGCAATCGTCATTACACGTTCTTGGTGTGTCTGTTTTGCTGGTGT 76
||||||||||||||||||||||| ||||||||||| | ||||||||||||||| ||||||
Sbjct 157 AAAAAATGGTGAAGAAGCAATCGCCATTACACGTTGTCGGTGTGTCTGTTTTGATGGTGT 216
Query 77 TGTTATGTTGTGTTAATTACAGTCTCTGTGAAAAGATCAAAACCTATAAGCTCACAAGAG 136
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 217 TGTTATGCAGTGTTAATTACAGTCTCTGTGAAAAGATCAAAACGTATAAGCTCACAAGAG 276
Query 137 GAAGCTTAAGTGTTACCTTCACTAACTATGGTGCTGTCATGACCTCTCTTCTCCTCCCTG 196
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 GAAGCTTAAGTGTTACTTTCACTAACTATGGTGCTGTCATGACCTCTCTTCTCCTCCCTG 336
Query 197 ACAGACATGGAAAACAAGACGATGTTGTTCTTGGATTTGATACTGTTGATGGTTACAAGA 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 ACAGACATGGAAAACAAGACGATGTTGTTCTTGGATTTGATACTGTTGATGGTTACAAGA 396
Query 257 ATGATACAACATATTTTGGAGCAATTGTGGGAAGAGTGGCTAATAGAATAGGAGGTGCTA 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 ATGATACAACATATTTTGGAGCAATTGTGGGAAGAGTGGCTAATAGAATAGGAGGTGCTA 456
Query 317 AATTCAAGTTGAATGGTCAACTCTACAAAACCGATCCCAACGAAGGCCATAACACTCTCC 376
|||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 457 AATTCAAGTTAAATGGTCATCTCTACAAAACCGATCCCAACGAAGGCCGTAACACTCTCC 516
Query 377 ATGGTGGTACAAAAGGATTTAGTGATGTGATTTGGTCAGTCCAAAACTACGTTCCCACTA 436
|||||||| |||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 517 ATGGTGGTTCAAAGGGATTTAGTGATGTGATTTGGTCAGTCCAAAAGTATGTTCCCACTA 576
Query 437 GTCACATTACTTTCACATACAATAGCTTCGATGGTGAAGAAGGTTTTCCGGGGAACGTGA 496
|||||||||||||||||||| |||||||||| |||||||||||||||||||| || ||||
Sbjct 577 GTCACATTACTTTCACATACGATAGCTTCGACGGTGAAGAAGGTTTTCCGGGCAATGTGA 636
Query 497 CGGTGAAAGTGACGTACATGTTGATCGGAGAAAACAAACTCGGCGTAAAAATGGAAGCAA 556
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 637 CGGTGAAAGTGACGTACATGTTGATCGGAGAAAACAAACTCGGTGTAAAAATGGAAGCAA 696
Query 557 AGCCACTCAACAAACCAACACCAATCAACTTAGCTCTCCACACTTACTGGAACCTCCACA 616
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 AGCCACTCAACAAACCTACACCAATCAACTTAGCTCTCCACACTTACTGGAACCTCCACA 756
Query 617 GCCACAACTCCGGCGA-CATCCTCTCCCACAAAATCCAACTCCTCGCCGGAAAAATCACT 675
||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 757 GCCACAACTCCGG-GAACATCCTCTCCCACAAAATTCAACTCCTCGCCGGAAAAATCACT 815
Query 676 CCAGTCGACGACAAACTCATTCCCACCGGCGAAATCACCCCCATAACCGGAACTCCTTAC 735
|| |||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||
Sbjct 816 CCCGTCGACGACAAACTCATTCCCACCGGAGAAATCACCTCCATTACCGGAACTCCTTAC 875
Query 736 GATTTCCTCGAGCCACGCGAGATCGGAAGCCGAATCCACGAATTACCCGGCGGTTACGAC 795
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 876 GATTTCCTCGAGCCACGTGAGATCGGTAGCCGGATCCACGAATTACCCGGCGGTTACGAC 935
Query 796 ATCAATTACGTCATCGACGGACCGATCGGGAAACATCTGAGGAAAACTGCGGTTGTGACG 855
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 ATCAATTACGTGATCGACGGACCGATCGGGAAACATCTGAGGAAAACTGCGGTTGTGACG 995
Query 856 GAGGAAGTCACCGGGAGGAAGATGGAGCTGTGGACGAATCAGCCTGGTGTTCAGTTTTAC 915
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 GAGCAAGTCACCGGGAGGAAGATGGAGCTGTGGACGAATCAGCCTGGTGTTCAGTTTTAC 1055
Query 916 ACGAGTAATATGATGACACGTGTCGTCGGAAAAGGTAAAGCCGTTTATGAGAAATACGGT 975
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1056 ACGAGTAATATGATGAAACGTGTCGTCGGTAAAGGTAAAGCCGTTTATGAGAAATACGGT 1115
Query 976 GGCTTGTGTCTGGAGACGCAAGGCTTCCCAGATTCCGTCAATCACAAGAA-TTTCCCGTC 1034
||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1116 GGCTTGTGTTTGGAGACTCAAGGCTTCCCAGATTCCGTCAATCACAAGAACTTTCC-GTC 1174
Query 1035 GCAGATTGTGAATCCAGGCGAGAGTTATTTGCATGTTATGGTCTTCAGATTCACTGCTCA 1094
||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1175 GCAGATTGTTAATCCCGGCGAGAGTTATTTGCATGTTATGCTCTTCAGATTCACTGCTCA 1234
Query 1095 CTAATCGGGTCGGGTCGGGT 1114
||||||||||||||||||||
Sbjct 1235 CTAATCGGGTCGGGTCGGGT 1254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54818995140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5