BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937528

Length=335
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G47833.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   503    4e-142


> AT3G47833.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G62575.2); 
Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17648623-17650140 
FORWARD LENGTH=691
Length=691

 Score =  503 bits (272),  Expect = 4e-142
 Identities = 317/338 (94%), Gaps = 6/338 (2%)
 Strand=Plus/Plus

Query  1    ATTTTGGCTCCTCATCGGAAATGGCGTTTTTACTCAACACCTCGATTTCGTCTCACCTCC  60
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  79   ATTTTGGCTCCTCATCGGAAATGGCGTTTTTACTCAACACCTCGATTTCATCTCACCTCC  138

Query  61   GATCTTCTTCACAGAAGACTGATGGTGCTTTAGCTCAATCCCGTCGTGGGTTCCATGTGG  120
            |||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct  139  GATCTTCTTCCCAGAAGACGGATGGTGCTTTAGCTCAATCCCGTCGCGGGTTCCATGTGG  198

Query  121  AGCTAGGTGCTCGTGAGAAAGCTCTCTTGGCTGAGGATTCATCTTTGAGGAGATTCAAGT  180
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  199  AGCTAGGTGCTCGTGAGAAAGCTCTCTTGGCTGAGGATGCATCTTTGAGGAGATTCAAGT  258

Query  181  CGCATAAGAAAGGCGTGCACCGATTGAAGAGGATTGGAGATGTGCTCACAGTTGTTGTTG  240
            ||||||||||||| || ||  ||||||| || ||||||||||||||||||||||| ||||
Sbjct  259  CGCATAAGAAAGGTGTTCATAGATTGAAAAGAATTGGAGATGTGCTCACAGTTGTCGTTG  318

Query  241  TTGCTGGATGCTGCTATGAGATCTATGCAAGAGTAATGATGAGAAAGGACGCTCAGGCTG  300
            | |||||||||||||||||||||||||| |||||   |||||||||||| ||||||||||
Sbjct  319  TCGCTGGATGCTGCTATGAGATCTATGCGAGAGT---GATGAGAAAGGAAGCTCAGGCTG  375

Query  301  CA-G-G-AAGCTCATGAGTTTCTTTATCTCCCTTTTTA  335
            || | | |||||||||||||||||||||||||||||||
Sbjct  376  CATGAGGAAGCTCATGAGTTTCTTTATCTCCCTTTTTA  413



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15633269939


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5