BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937531
Length=2143
Score E
Sequences producing significant alignments: (Bits) Value
AT3G47840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3169 0.0
AT5G66455.1 | Symbols: | pseudogene of pentatricopeptide (PPR)... 1050 0.0
> AT3G47840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:17651912-17654032 FORWARD LENGTH=2121
Length=2121
Score = 3169 bits (1716), Expect = 0.0
Identities = 1992/2124 (94%), Gaps = 24/2124 (1%)
Strand=Plus/Plus
Query 21 ATGATTTTGAGTGTGAGAAATGGCGGCACAATCCAACGGTTTTGTACAGCTTCCATTTCA 80
||||||| ||||||||||||| |||||||||||||||||||||||||| |||| ||||||
Sbjct 1 ATGATTTCGAGTGTGAGAAATTGCGGCACAATCCAACGGTTTTGTACAACTTCGATTTCA 60
Query 81 TTGCTCGAGAAACCAG-T--GGAG-A-A------G-A-CT--ATTCA-G-G-TGGTCACA 122
|||||| ||||||| | | |||| | | | | || | ||| | | |||||| |
Sbjct 61 TTGCTCCAGAAACCGGTTGAGGAGAACATTGTCCGTATCTCGAATCAGGTGATGGTCAAA 120
Query 123 TTTGATACCAACTCTCACC-TACGAAGTCTCATCAATGCCGGGAATTTGCGTGTTGCTCG 181
|||||| |||||||||||| || | |||||||||||||| ||||||||||| | ||||||
Sbjct 121 TTTGATCCCAACTCTCACCTTA-GGAGTCTCATCAATGCAGGGAATTTGCGAGCTGCTCG 179
Query 182 CCAAGTGTTTGATAGAATGCCACACAGAGATATTGTTTCATGGACAGCTATCATTAAAGG 241
||||||||| |||| |||||| ||| |||||||||||||||||||| | ||||||||| |
Sbjct 180 CCAAGTGTTCGATAAAATGCCCCACGGAGATATTGTTTCATGGACATCCATCATTAAAAG 239
Query 242 ATACGTAACTGCAAACAATTCTGACGAAGCAATGATTTTGTTCTCTGCAATGCGTGTTGT 301
|||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||
Sbjct 240 ATACGTAACTGCAAACAACTCTGACGAAGCACTGATTTTGTTCTCCGCAATGCGTGTTGT 299
Query 302 TGATCCTGCTGTCTCACCTGATACCTCTGTGGTAAGTGTTGTACTCAAGGCTTGTGGTCA 361
||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 300 TGATCATGCCGTCTCACCTGATACCTCTGTGCTAAGTGTTGTACTCAAGGCTTGTGGTCA 359
Query 362 AAGTTCCAACATTTCATATGGAGAATCTTTACATGCTTATGCGGTGAAAACATCGCTGCT 421
||| ||||| ||| |||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 360 AAGCTCCAATATTGCATATGGAGAATCTTTGCATGCTTATGCGGTGAAAACTTCGCTTCT 419
Query 422 TAGCTCTGTATTTGTGGGAAGTTCTTTACTGGATATGTATAAGAGAGTTGGAAAGATCGA 481
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 CAGCTCTGTATATGTGGGAAGTTCTTTACTGGATATGTATAAGAGAGTTGGAAAGATTGA 479
Query 482 GAAGAGTTGCAGAGTTTTTAGTGAAATGCCTTTTAGAAATGCTGTAACATGGACAGCGAT 541
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 TAAGAGTTGCAGAGTCTTTAGCGAAATGCCTTTTAGAAATGCTGTAACATGGACAGCGAT 539
Query 542 CATAACAGGGTTGGTTCACGCTGGTCGTTACAAGGAAGGTCTTACGTACTTTTCTGAAAT 601
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TATTACGGGGTTGGTTCACGCTGGTCGTTACAAGGAAGGTCTTACGTACTTTTCTGAAAT 599
Query 602 GTCGAGCTCCGAAGAACTATCTGATACTT-TCACATTTGCTATTGCCTTGAAGGCTTGTG 660
|||||| || ||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 600 GTCGAGATCGGAAGAACTATCTGATACTTAT-ACATTTGCTATTGCCTTGAAGGCTTGTG 658
Query 661 CTGGTTTACGTCAAGTTAAATACGGTAA-ACAGATTCATACTCATGTGATAGTGAGAGGC 719
|||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||
Sbjct 659 CTGGTTTACGTCAAGTTAAATATGGTAAGGC-GATTCATACTCATGTGATAGTGAGAGGC 717
Query 720 TTTGATGCCACTGTTTGGGTGGCTAACTCGTTGGCGACAATGTACACAGAATGTGGGGAA 779
|||| | ||||| |||| ||||||||||| | |||||||||||||| ||||||||||||
Sbjct 718 TTTGTTACCACTCTTTGCGTGGCTAACTCACTCGCGACAATGTACACTGAATGTGGGGAA 777
Query 780 ATGCGGGACGGACTTTGTTTGTTTGAAAATATGAGTGAGAGGGATGTGGTTTCGTGGACA 839
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ATGCAGGACGGACTTTGTTTGTTTGAAAATATGAGTGAGAGGGATGTGGTTTCGTGGACA 837
Query 840 AGCCTTATCGTGGCTTACAATCGAATAGGTCATGAAGAAAAAGCTGTGGAGACATTTATA 899
|||||||| ||||||||||| ||||| ||||| |||| ||||||||||||||||||||||
Sbjct 838 AGCCTTATTGTGGCTTACAAGCGAATCGGTCAAGAAGTAAAAGCTGTGGAGACATTTATA 897
Query 900 AAGATGAGAAATTCTCAAGTACCTCCTAATGAACAAACTTTTGCAACGATGTTTTCTGCG 959
|||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||
Sbjct 898 AAGATGAGAAATTCTCAAGTCCCTCCTAATGAACAAACTTTTGCATCAATGTTTTCTGCG 957
Query 960 TGTGCGAGTCTTTCTAGACTTGTGTGGGGCGAGCAGCTCCACTGTAATGTTTTCTCTCTA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 958 TGTGCGAGTCTTTCTAGACTTGTGTGGGGCGAGCAGCTCCACTGTAATGTTTTGTCTCTA 1017
Query 1020 GGTCTAAATGATTCTTTGTCAGTGAGTAACTCGATGATGAAAATGTATTCAACATGTGGG 1079
||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1018 GGTTTAAATGATTCTTTGTCAGTGAGTAACTCGATGATGAAGATGTATTCTACATGTGGG 1077
Query 1080 AAGTTAGACTCTGCTTCTGTTTTGTTTCAAGGAATGGGATGCAGGGACATTATTTCGTGG 1139
|| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1078 AATTTAGTCTCTGCTTCTGTTTTGTTTCAAGGAATGAGATGCAGGGACATTATTTCGTGG 1137
Query 1140 AGCACGATTATTGGAGGATACTCTCAAGCCGGTTTTGGAGAAGAAGCTTTTAAGTATTTC 1199
|| || ||||||||||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1138 AGTACCATTATTGGAGGGTACTGTCAAGCCGGTTTTGGAGAAGAAGGTTTTAAGTATTTC 1197
Query 1200 TCATGGATGAGACAAGCAGGGACAAAACCAACAGATTTTGCTCTTGCTAGTTTGCTGAGT 1259
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TCATGGATGAGACAATCAGGGACAAAACCAACAGATTTTGCTCTTGCTAGTTTGCTGAGT 1257
Query 1260 GTTTCAGGAAATATGGCAGTTCTTGAGGGAGGCAGGCAAGTTCACGCGCTTGCTCTTTGT 1319
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GTTTCAGGAAACATGGCAGTTATTGAGGGAGGCAGGCAAGTTCACGCGCTTGCTCTTTGT 1317
Query 1320 TTTGGTTTAGAACAGAACTCCACGGTTCGTAGTACTCTCATTAATATGTACTCGAAATGT 1379
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1318 TTTGGTTTAGAACAGAACTCCACGGTTCGTAGTAGTCTGATTAATATGTACTCGAAATGT 1377
Query 1380 GGAAATATCAAAGAAGCTTCAAAGATATTCGAAGAAACAGATAGAGATGATATTGTTTCT 1439
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1378 GGAAGTATCAAAGAAGCTTCAATGATATTCGGAGAAACAGATAGAGATGATATTGTTTCT 1437
Query 1440 CTGACAGCTATGATCAATGGATATGCAGAACATGGAAAGAGCAAAGAAGCTATTGATCTG 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 CTGACAGCTATGATCAATGGATATGCAGAACATGGAAAGAGCAAAGAAGCTATTGATCTG 1497
Query 1500 TTTGAGAAGAGTCTAAAAGTTGGTTTCAGTCCCGACTCTGTAACTTTCATCAGCGTTCTC 1559
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1498 TTTGAGAAGAGTCTAAAGGTTGGTTTCAGACCCGACTCTGTAACTTTCATCAGCGTTCTC 1557
Query 1560 ACCGCCTGTAGTCATTCGGGACAGCTTGACCTTGGTTTTCACTATTTCAACTTGATGCAA 1619
|||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1558 ACCGCCTGCACTCATTCGGGACAGCTTGACCTTGGTTTTCACTATTTCAACATGATGCAA 1617
Query 1620 GAGAAGTATAATATGAGACCAGCCAAGGAACATTATGGTTGTATGGTTGATCTGTTATGT 1679
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GAGACGTATAATATGAGACCAGCCAAGGAACATTATGGTTGTATGGTTGATCTGTTATGT 1677
Query 1680 AGAGCAGGACGGCTAAGTGAAGCAGAGAAGATGATCGATGAGATGTCATGGAAGAAAGAC 1739
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1678 AGAGCAGGACGGCTAAGTGATGCAGAGAAGATGATCAATGAGATGTCATGGAAGAAAGAC 1737
Query 1740 GATGTAGTCTGGACCACACTTCTCATAGCGTGTAAGGCCAAAGGAGACATTGAACGTGGG 1799
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1738 GATGTAGTCTGGACCACACTTCTCATTGCGTGTAAGGCCAAAGGAGACATTGAACGTGGG 1797
Query 1800 GGAAGGGCGGCCGAGAGGATTCTAGAGCTGGATCCTACTTGTGCAACTGCACTTGTAACA 1859
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 AGAAGGGCTGCTGAGAGGATTCTAGAGCTGGATCCTACTTGTGCAACTGCACTTGTAACA 1857
Query 1860 CTAGCCAATATATATTCAAGCACAGGGAACTTGGAAGAAGCTGCGAATGTAAGGAAGAAT 1919
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1858 CTAGCCAATATATATTCAAGCACAGGGAACTTGGAAGAAGCTGCAAATGTAAGAAAGAAT 1917
Query 1920 ATGAAAGCAAAAGGCGTGATCAAAGAGCCTGGATGGTCATCAATTAAGATCAAGGATCGC 1979
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1918 ATGAAAGCAAAAGGCGTGATCAAAGAGCCCGGATGGTCATCAATTAAGATCAAGGATTGC 1977
Query 1980 GTTTCAGCGTTTGTATCTGGCGATCGGTTCCATCCTCTAAGTGAAGATATATACAATATC 2039
|||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||
Sbjct 1978 GTTTCAGCGTTTGTATCTGGTGATCGGTTCCATCCGCAAAGTGAAGATATATACAATATC 2037
Query 2040 TTGGAATTAGTAGTATCTGGTGCAGAAGCTCATAGATTTGATTGTACAATAAAGAGGGTT 2099
|||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||| | |
Sbjct 2038 TTGGAATTAGCAGTATCTGGTGCAGAAGCTCATAGATTTGATTGCACATTAAAGAGAGCT 2097
Query 2100 TTTGGGGTTTATTCATATTCCTGA 2123
||||||||| ||| ||||||||||
Sbjct 2098 TTTGGGGTTAATTTATATTCCTGA 2121
> AT5G66455.1 | Symbols: | pseudogene of pentatricopeptide (PPR)
repeat-containing protein | chr5:26535980-26538011 REVERSE
LENGTH=1449
Length=1449
Score = 1050 bits (568), Expect = 0.0
Identities = 843/970 (87%), Gaps = 41/970 (4%)
Strand=Plus/Plus
Query 1126 ACATTATTTCGTGGAGCACGATTATTGGAGGATACTCT----CA---AGCC-GGTTTTGG 1177
|||||||||||||||||||||||| | |||| |||||| || |||| ||||| ||
Sbjct 384 ACATTATTTCGTGGAGCACGATTACTCGAGGGTACTCTCAGGCACTCAGCCAGGTTTAGG 443
Query 1178 AGAAGAAGCTTTTAAGTATTTCTCATGGATGAGACAAGCAGGGACAAAACCAACAGATTT 1237
|||||||| ||||| |||||||||||||||||||||||||||| ||||||| | | ||
Sbjct 444 AGAAGAAGTTTTTACGTATTTCTCATGGATGAGACAAGCAGGGTCAAAACC-A-A-ATCC 500
Query 1238 TGCTCTTGCTAGTTTGCTGAGTGTTTCAGGAAATATGGCAGTTCTTGAGGGAGGCAGGCA 1297
||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 501 TGCTCTTACTAGTTTGCTGAGTGTTTCAGGAACCATGGCAGTTCTTGAGCAAGGCAGGCA 560
Query 1298 AGTTCACGCGCTTGCTCTTTGTTTTGGTTTAGAACAGAACTCCACGGTTCGTAGTACTCT 1357
|||||| ||||||||||||| | || |||||||||||||||| || |||||||| ||||
Sbjct 561 AGTTCATGCGCTTGCTCTTTATCTTAGTTTAGAACAGAACTCTACTATTCGTAGTGCTCT 620
Query 1358 CATTAATATGTACTCGAAATGTGGAAATATCAAAGAAGCTTCAAAGATATTCGAAGAAAC 1417
|||||||||||||| |||||||||| |||| |||||||||||||| |||||| |||||
Sbjct 621 GATTAATATGTACTCAAAATGTGGAAGTATCGAAGAAGCTTCAAAG-TATTCGCAGAAAT 679
Query 1418 AGATAGAGATGATATTGTTTCTCTGACAGCTATGATCAATGGATATGCAGAACATGGAAA 1477
||| ||||||||||||| || ||| | ||||||||||||||||||||||||||||
Sbjct 680 AGACAGAGATGATATTG-TT-TCT------T-TGATCAATGGATATGCAGAACATGGAAA 730
Query 1478 GAGC-AAAGAAGCTATTGATCTGTTTGAGAAGAGTCTAAAAGTTGGTTTCAGTCCCGACT 1536
|| | ||| ||||||| |||||||||||||||||||| || |||||| |||| |||||||
Sbjct 731 GACCTAAA-AAGCTATAGATCTGTTTGAGAAGAGTCTGAAGGTTGGTCTCAGACCCGACT 789
Query 1537 CTGTAACTTTCATCAGCGTTCTCACCG-CCTGTAGTCATTCGGGACAGCTTGACCTTGGT 1595
||||||||||||||||| ||||| || ||| || |||||| ||||| | ||||||||||
Sbjct 790 CTGTAACTTTCATCAGCATTCTC-TCGCCCTTTACTCATTCAGGACATCATGACCTTGGT 848
Query 1596 TTTCACTATTTCAACTTGATGCAAGAGAAGTATAATATGAGACCAGCCAAGGAACATTAT 1655
||||||||| |||||||||||||||||||||||| ||| |||||| |||||||||| |||
Sbjct 849 TTTCACTATCTCAACTTGATGCAAGAGAAGTATATTATCAGACCAACCAAGGAACACTAT 908
Query 1656 GGTTGTATGGTTGATCTGTTATGTAGAGCAGGACGGCTAAGTGAAGCAGAGAAGATGATC 1715
|| ||||||||||||||| | ||||||||||| |||| ||||| |||||| ||||||||
Sbjct 909 GGATGTATGGTTGATCTGCTGTGTAGAGCAGGCCGGCCAAGTGTTGCAGAGCAGATGATC 968
Query 1716 GATGAGATGTCATGGAAGAAAGACGATGTAGTCTGGACCACACTTCTC-ATAGCGTGTAA 1774
|||||||| |||||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 969 AATGAGATGCCATGGAAGAAGGACGATGTAGTCTGGACCACACTTCTCAAT-GCGTGTAA 1027
Query 1775 GGCCAAAGGAGACATTGAACGTGGGGGAAGGGCGGCCGAGAGGATTCTAGAGCTGGATCC 1834
||| |||||||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1028 GGCGAAAGGAGACACTGAACGTGGAAGAAGGGCGGCTGAGAGGATTCTAGAGCTGGATCC 1087
Query 1835 TACTTGTGCAACTGCACTTGTAACACTAGCCAATATATATTCAAGCACAGGGAACTTGGA 1894
||||| || ||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1088 TACTTCTGAAACTGCATTTGTAACACTAGCCAATATATATTCAAGCACAGGGAAATTGGA 1147
Query 1895 AGAAGCTGCGAATGTAAGGAAGAATA-TGAAAGCAAAAGGCGTGATCAAAGAGCCTGGAT 1953
|||||||||| |||||||||| | || ||||| |||| ||||||||||||| ||||||||
Sbjct 1148 AGAAGCTGCGCATGTAAGGAA-AGTAATGAAATCAAACGGCGTGATCAAAGTGCCTGGAT 1206
Query 1954 GGTCATCAATTAAGATCAAGGATCGCGTTTCAGCGTTTGTA-TCTGGCGATCGGTTCCAT 2012
||||||||| |||||||| |||| | | |||| ||| | | | ||| || | | ||
Sbjct 1207 GGTCATCAACTAAGATCATGGATAGGGATTCAACGT--GCAGT-TGG---TC--T-C-AT 1256
Query 2013 CCTCTAAGTGAAGATATATACAATATCTTGGAATTAGTAGTATCTGGTGCAGAAGCTCAT 2072
| | ||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 1257 TCACAAAGTGAAGATATATACAGTATATTGGAATTAGTAGTATCCGGTGCAGAAGCTCAT 1316
Query 2073 AGATTTGATT 2082
| || |||||
Sbjct 1317 A-ATATGATT 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106274553765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5