BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937551
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48030.1 | Symbols: | hypoxia-responsive family protein / z... 1520 0.0
> AT3G48030.1 | Symbols: | hypoxia-responsive family protein /
zinc finger (C3HC4-type RING finger) family protein | chr3:17725410-17727954
REVERSE LENGTH=1050
Length=1050
Score = 1520 bits (823), Expect = 0.0
Identities = 977/1049 (93%), Gaps = 19/1049 (2%)
Strand=Plus/Plus
Query 21 ATGAGTGCGGTAGAACCAGACATGGAAGATCTGTTCCAGGAGAAGAAGCGTGTCAGGAAT 80
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGTTCGGTAGAACCAGACATGGAAGATCTGTTCCAGGAGAAGAAGCGTGTCAGGAAT 60
Query 81 CCTCTCGTTCCTCTCGGTGCACTTATGACTGCGGGAGTGCTTACGGCTGGGCTGATTAGT 140
||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 61 CCTCTCGTTCCTCTCGGTGCACTTATGACCGCGGGAGTGCTCACGGCTGGGTTGATTAGT 120
Query 141 TTCAGAAGAGGCAATTCTCAGTTGGGTCAGGTTTTGATGAGAGCTAGAGTGGTCGTCCAG 200
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 TTCAGAAGAGGCAATTCTCAGTTGGGTCAGGTTTTGATGAGAGCTAGGGTGGTCGTCCAG 180
Query 201 GGTGCTACTGTCGCTTTAATGGTTGGAACCGCTTATTACTACGGTGATAATCC------- 253
||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GGTGCTACTGTCGCTTTAATGGTTGGAACCGGTTATTACTACGGTGATAATCCGTGGAAG 240
Query 254 --GTTACTTTTGTCTGAAATCCATGAAACAGAAGCTCTTTCACCTAAATCTTCATCTGCA 311
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 AAGTTACTTTTGTCTGAAATCCATGAAACTGAAGCTCTTTCACCTAAATCTTCATCTGCA 300
Query 312 GCAACTA-TTACTCTTATGAACCAGAAAGATCCATCTTCAAGCTCTATAGTCTCTGTTTT 370
||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 GCAAC-ACTAACTCTTATGAACCAGAAAGATCCATCTTCAAGCTCTATAGTGTCTGTTTT 359
Query 371 ATGTTTAGTTATCTCTGTTCTTGCTCTTATCATCGTCTTCCTAGGTGTCCTCTACTTAAT 430
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||
Sbjct 360 ATGTTTAGTTATCTCTGGTCTTGCTCTTATCATCGTCTTCCTCGGTGTCCTCTACTTGAT 419
Query 431 CTTCAAATTTCTCCGCAAGTCCTCGACTTTATTTCCCATTCCTCATTTCAATC-CCAACC 489
|||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 420 CTTCAAATTTCTCCGCAAGTCCTCGACTTTATTTCCCATTCCCCATTTCAA-CTACAACC 478
Query 490 CAGAtctctcttcttcctcctctcctcagctccagcacctcttcttcctccATGACTCTG 549
||||||||| ||||| |||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 479 CAGATCTCTTTTCTTTCTCCTCGCCTCAGCTCCAGCACCTGTTCTTCCTCCATGACTCTG 538
Query 550 GTCTAGACCAGACCT-CCATTGATGCACTTCCCGTGTTCCTCTATGGTAACGTAACCATG 608
|||||||||||| || |||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct 539 GTCTAGACCAGA-CTGCCATCGATGCACTTCCAGTGTTCCTCTATGGTAATGTAACCATT 597
Query 609 AGTC-TGAAAGAGTCTTTCGATTGCGCTGTATGTCTCAATGAGTTCTCTGACACAGACAA 667
|||| || || || | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 598 AGTCTTG-AACAGCCATTCGATTGCGCCGTATGTCTCAATGAGTTCTCTGACACAGACAA 656
Query 668 GCTCAGGCTACTCCCAGTCTGTAGCCACGCATTCCATCTTCACTGTATCGACACATGGCT 727
|||||| |||||||| || |||||||| || |||||||| ||||||||||||||||||||
Sbjct 657 GCTCAGACTACTCCCTGTTTGTAGCCATGCTTTCCATCTACACTGTATCGACACATGGCT 716
Query 728 TCTCTCCAACTCTACTTGCCCTCTCTGCAGACGATCACTCTCAACCTCAAACGTCTGCTA 787
||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 717 TCTTTCGAACTCTACTTGCCCTCTCTGCAGAAGATCACTCTCAACCTCAAACGTCTGCTA 776
Query 788 TAACCA-TGCTGAGGCTCTTGTCGTCCCCTTGTCCGGGCATCAGCAGGTCGACGAAGGCA 846
||||| | | ||| ||||||||| ||||||||| |||||||||||||| || || ||||
Sbjct 777 CAACCACT-CGGAGACTCTTGTCGCCCCCTTGTCTGGGCATCAGCAGGTGGATGACGGCA 835
Query 847 AAGCCTCCCTTGCTAAAAGAGTCTTCTCTGTTCGTCTTGGGAGATTCAAAAGCACGAACG 906
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 836 AAGCCTCCCTTGCTAAAAGAGTTTTCTCTGTTCGTCTCGGGAGATTCAAAAGCACGAACG 895
Query 907 AAAGTCAAAGTCAACGACATGATGTCAAAGATGAAATTGGTGTAGGAATGCCAAGAAGGT 966
||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| |
Sbjct 896 AAAGTCAAAGTCAACGACATGATGTCAAAGATGAAATCGGGGTAAGAATGCCAAGAAGAT 955
Query 967 GTTACTCGATGGGCACACAACAGTATCTCGAATGCGATCAAGATTTTGTGGTGGCTCTGT 1026
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 956 GTTACTCGATGGGCACGCAACAGTATCTCGTATGCGATCAAGATTTTGTGGTGGCTCTGT 1015
Query 1027 CTTCGTCTCTTCGTGAGGGAAATACCGGT 1055
||||||||| |||||||||||||| ||||
Sbjct 1016 CTTCGTCTCCTCGTGAGGGAAATATCGGT 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55973607675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5