BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937559
Length=593
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48100.1 | Symbols: ARR5, ATRR2, IBC6, RR5 | response regula... 979 0.0
> AT3G48100.1 | Symbols: ARR5, ATRR2, IBC6, RR5 | response regulator
5 | chr3:17758427-17760874 REVERSE LENGTH=1374
Length=1374
Score = 979 bits (530), Expect = 0.0
Identities = 572/592 (97%), Gaps = 3/592 (1%)
Strand=Plus/Plus
Query 1 ACGATCCTACTCTTCTTCATATGGCTGAGGTTTTGCGTCCGGAGATGTTAGATATCTCTA 60
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 115 ACGATCCTACTCTTCTTGATATGGCTGAGGTTTTGCGTCCCGAGATGTTAGATATCTCTA 174
Query 61 ACGACACTTCTTCATTAGCATCACCGGAACTTCTTCATGTTCTTGCCGTTGATGATAGCA 120
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
Sbjct 175 ACGACACTTCTTCATTAGCATCACCGAAACTTCTTCATGTTCTTGCTGTTGATGATAGTA 234
Query 121 TGGTTGATCGGAAGTTCATCGAACGGTTGCTTAGAGTCTCTTCTTGTAAAGTTACTGTTG 180
|||||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||
Sbjct 235 TGGTTGATCGGAAGTTCATCGAGCGGTTACTCAGAGTCTCATCTTGTAAAGTTACTGTTG 294
Query 181 TCGATAGTGCGACAAGAGCTTTACAATATCTTGGATTAGATGGAGAG---AATAGTTCGG 237
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 295 TCGATAGTGCGACAAGAGCTTTACAATATCTTGGATTAGATGGAGAGAATAATAGTTCGG 354
Query 238 TTGGATTTGAGGATCTGAAGATTAATTTGATAATGACGGATTACTCTATGCCTGGGATGA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TTGGATTTGAGGATCTGAAGATTAATTTGATAATGACGGATTACTCTATGCCTGGGATGA 414
Query 298 CTGGATATGAACTATTGAAGAAGATCAAAGAATCATCAGCTTTCAGAGAAATACCAGTTG 357
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CTGGATATGAACTACTGAAGAAGATCAAAGAATCATCAGCTTTCAGAGAAATACCAGTTG 474
Query 358 TGATTATGTCTTCAGAGAACATCTTGCCTCGTATCGATAGATGTCTTGAAGAAGGAGCTG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TGATTATGTCTTCAGAGAACATCTTGCCTCGTATCGATAGATGTCTTGAAGAAGGAGCTG 534
Query 418 AAGATTTTTTATTGAAGCCTGTGAAATTAGCTGATGTGAAGAGATTAAGAGATTCTTTAA 477
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 AAGATTTCTTATTGAAGCCTGTGAAATTAGCTGATGTGAAGAGATTAAGAGATTCTTTAA 594
Query 478 TGAAAGCTGAAGAAAGAGCTTTTAAGAATATTATGCACAAGAGAGAGCTCGAAGCTAATG 537
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 595 TGAAAGCTGAGGAAAGAGCTTTTAAGAATATTATGCACAAGAGAGAGCTTGAAGCTAATG 654
Query 538 ATATCTACTCGCAGCTTAAACGTGCAAAGATCTGAGTTTACCATATTCCACG 589
|||||||||||||||| ||||| ||||||||||||||||| || ||||||||
Sbjct 655 ATATCTACTCGCAGCTAAAACGCGCAAAGATCTGAGTTTATCAGATTCCACG 706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28532995496
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5