BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937563 Length=206 Score E Sequences producing significant alignments: (Bits) Value AT3G48130.1 | Symbols: RSU1 | ribosomal protein L13 homolog | c... 211 2e-54 > AT3G48130.1 | Symbols: RSU1 | ribosomal protein L13 homolog | chr3:17774952-17775128 REVERSE LENGTH=177 Length=177 Score = 211 bits (114), Expect = 2e-54 Identities = 157/178 (88%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 10 ATGAAACACTACATGCCTATTGTTCGTGAGACTCCAACAATGGAGCTTGTAAAGCTCACC 69 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGAAGCACTACATGCCTATTGTTCGTGAGACTCCAACAATGGAGCTCGTAAAGCTCACC 60 Query 70 CCCGACATGAAATCGTTCGAAGCTTACAAAACTATCCGTGTAG-AGCACACAATGAAGAG 128 | || |||||||| || || || || || ||| | ||||||| | | |||||||||||| Sbjct 61 GCTGAAATGAAATCCTTTGAGGCGTATAACACTCTTCGTGTAGCA-CGCACAATGAAGAG 119 Query 129 ACATGCCGGTGCTAGAGCCAAGAGGGCTGCAGAGGCTGAGAAAGAAGAGAAGAATTGA 186 |||||| ||||||||||| ||||||||| ||||||||||||| ||||||||||| ||| Sbjct 120 ACATGCAGGTGCTAGAGCGAAGAGGGCTTCAGAGGCTGAGAACGAAGAGAAGAAGTGA 177 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9205147233 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5