BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937563

Length=206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G48130.1 | Symbols: RSU1 | ribosomal protein L13 homolog | c...   211    2e-54


> AT3G48130.1 | Symbols: RSU1 | ribosomal protein L13 homolog | 
chr3:17774952-17775128 REVERSE LENGTH=177
Length=177

 Score =  211 bits (114),  Expect = 2e-54
 Identities = 157/178 (88%), Gaps = 2/178 (1%)
 Strand=Plus/Plus

Query  10   ATGAAACACTACATGCCTATTGTTCGTGAGACTCCAACAATGGAGCTTGTAAAGCTCACC  69
            ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGAAGCACTACATGCCTATTGTTCGTGAGACTCCAACAATGGAGCTCGTAAAGCTCACC  60

Query  70   CCCGACATGAAATCGTTCGAAGCTTACAAAACTATCCGTGTAG-AGCACACAATGAAGAG  128
             | || |||||||| || || || || || ||| | ||||||| | | ||||||||||||
Sbjct  61   GCTGAAATGAAATCCTTTGAGGCGTATAACACTCTTCGTGTAGCA-CGCACAATGAAGAG  119

Query  129  ACATGCCGGTGCTAGAGCCAAGAGGGCTGCAGAGGCTGAGAAAGAAGAGAAGAATTGA  186
            |||||| ||||||||||| ||||||||| ||||||||||||| ||||||||||| |||
Sbjct  120  ACATGCAGGTGCTAGAGCGAAGAGGGCTTCAGAGGCTGAGAACGAAGAGAAGAAGTGA  177



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9205147233


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5