BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937568

Length=275
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G48180.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   294    2e-79


> AT3G48180.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G19020.1); 
Has 84 Blast hits to 84 proteins in 15 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17790465-17790919 
REVERSE LENGTH=455
Length=455

 Score =  294 bits (159),  Expect = 2e-79
 Identities = 243/281 (86%), Gaps = 15/281 (5%)
 Strand=Plus/Plus

Query  1    TCTTTCTCTTTCTCATACAGA-ATGGAGAGAAATTCTTGGGCCGATCAGTGGGACAAG-A  58
            |||||||| |||||||||| | ||||||||||| ||||||||||| ||||||||| || |
Sbjct  95   TCTTTCTCGTTCTCATACA-ATATGGAGAGAAACTCTTGGGCCGAGCAGTGGGAC-AGCA  152

Query  59   AT---CAAGCGTCGGGAAAACCGAA-TGATGGCGGAGACGGCGGTCGTGGCACTTCGGCG  114
            ||   ||| ||||||||||| | || | | |||||||| || ||| || |||  ||| | 
Sbjct  153  ATCAACAATCGTCGGGAAAAAC-AACTCACGGCGGAGAAGGTGGTGGT-GCA--TCGTCT  208

Query  115  AAATATAAAGAAAAAGTGGGGGTTGGATTAGGGAAGACGAAAGCGGCGGCGAGTTCCGGT  174
            ||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| || 
Sbjct  209  AAATACAAAGAGAAAGTGGGGGCTGGATTAGGGAAGACGAAAGCGGCGGCGAGTTCGGGG  268

Query  175  TTAAAGAAGGTGAAAATAGGAACGTCCCTGGGACTTAATTGGGTTAAAGACAAGTACAAC  234
            |||||||||||||| |||||||| ||  |||| |||||||||||||||||||||||||||
Sbjct  269  TTAAAGAAGGTGAAGATAGGAACATCGTTGGGTCTTAATTGGGTTAAAGACAAGTACAAC  328

Query  235  AAGACCACCACTAAGAATTGA-T--TCGTATCTTTGTTTTT  272
            ||||||||||||||||||||| |  || |||||||||||||
Sbjct  329  AAGACCACCACTAAGAATTGACTCATCATATCTTTGTTTTT  369



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12617204999


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5