BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937568 Length=275 Score E Sequences producing significant alignments: (Bits) Value AT3G48180.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 294 2e-79 > AT3G48180.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19020.1); Has 84 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17790465-17790919 REVERSE LENGTH=455 Length=455 Score = 294 bits (159), Expect = 2e-79 Identities = 243/281 (86%), Gaps = 15/281 (5%) Strand=Plus/Plus Query 1 TCTTTCTCTTTCTCATACAGA-ATGGAGAGAAATTCTTGGGCCGATCAGTGGGACAAG-A 58 |||||||| |||||||||| | ||||||||||| ||||||||||| ||||||||| || | Sbjct 95 TCTTTCTCGTTCTCATACA-ATATGGAGAGAAACTCTTGGGCCGAGCAGTGGGAC-AGCA 152 Query 59 AT---CAAGCGTCGGGAAAACCGAA-TGATGGCGGAGACGGCGGTCGTGGCACTTCGGCG 114 || ||| ||||||||||| | || | | |||||||| || ||| || ||| ||| | Sbjct 153 ATCAACAATCGTCGGGAAAAAC-AACTCACGGCGGAGAAGGTGGTGGT-GCA--TCGTCT 208 Query 115 AAATATAAAGAAAAAGTGGGGGTTGGATTAGGGAAGACGAAAGCGGCGGCGAGTTCCGGT 174 ||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 209 AAATACAAAGAGAAAGTGGGGGCTGGATTAGGGAAGACGAAAGCGGCGGCGAGTTCGGGG 268 Query 175 TTAAAGAAGGTGAAAATAGGAACGTCCCTGGGACTTAATTGGGTTAAAGACAAGTACAAC 234 |||||||||||||| |||||||| || |||| ||||||||||||||||||||||||||| Sbjct 269 TTAAAGAAGGTGAAGATAGGAACATCGTTGGGTCTTAATTGGGTTAAAGACAAGTACAAC 328 Query 235 AAGACCACCACTAAGAATTGA-T--TCGTATCTTTGTTTTT 272 ||||||||||||||||||||| | || ||||||||||||| Sbjct 329 AAGACCACCACTAAGAATTGACTCATCATATCTTTGTTTTT 369 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12617204999 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5