BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937575
Length=313
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48208.1 | Symbols: | Plant thionin family protein | chr3:1... 298 2e-80
> AT3G48208.1 | Symbols: | Plant thionin family protein | chr3:17846073-17846342
FORWARD LENGTH=270
Length=270
Score = 298 bits (161), Expect = 2e-80
Identities = 196/212 (92%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 21 ATGGCGATGATGAAGGTAATGTTGATGGTGGTGATGATGATGGTGTTGGTTGGTACC--- 77
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1 ATGGCGATGATGAAGGTAATGTTGATGGTGGTGATGATGATGGTCTTGGTTGGAACCATA 60
Query 78 --A-TAATAGGTGAAGAGTCACATGCAGATTGTTTGGAACGGTGTCAGCATTTGTGCGCT 134
| |||||||||||||||||||||| ||||||||| ||||||||||||| |||||| |
Sbjct 61 ATAGTAATAGGTGAAGAGTCACATGCGGATTGTTTGAAACGGTGTCAGCAACTGTGCGTT 120
Query 135 GATAAGCCTCTGGATAAGAATTGTGTCCGCCAATGCGTCTTTTTTAATTGCGGTCCTCCT 194
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GATAAGCCTTTGGATAAGAATTGCGTCCGCCAATGCGTCTTTTTTAATTGCGGTCCTCCT 180
Query 195 TCTCTTCCTACCAATGTTCATCATTCTAAGTA 226
|||||||||||||||||||||||||||||||
Sbjct 181 GCTCTTCCTACCAATGTTCATCATTCTAAGTA 212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14527379461
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5