BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937581
Length=1900
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48250.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2900 0.0
> AT3G48250.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:17870064-17871929 REVERSE LENGTH=1866
Length=1866
Score = 2900 bits (1570), Expect = 0.0
Identities = 1773/1870 (95%), Gaps = 17/1870 (1%)
Strand=Plus/Plus
Query 22 ATGTACAGATCAAAGGCAATCCTGTCTTCTCTTCGTA-ACGCTTACTCACAGATCTCTAC 80
||||||||||||| ||||||||||||||||||||| | |||| |||||||||||||||||
Sbjct 1 ATGTACAGATCAATGGCAATCCTGTCTTCTCTTCG-ACACGCGTACTCACAGATCTCTAC 59
Query 81 TCGATCGTATCTAAGCAGAGCTCAGGTGGGTTTTTCCTCGCACTCGAT-TTCGCCTCTCG 139
|||||||||||||||| || || |||||||||||||||| ||| | | |||||||||||
Sbjct 60 TCGATCGTATCTAAGCCGATCTAAGGTGGGTTTTTCCTCAAACTTG-TCTTCGCCTCTCG 118
Query 140 ATTCATTTGCAA---TCCCTAGTCGATTCCTTTGGAAATTCCGAACCTTTTCTTCGAAAC 196
|||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 119 ATTCATTTGCAATCGTCCCTAGTCGATTTCTTTGGAAATTTCGAACCTTTTCTTCGAAAC 178
Query 197 CAGATTCTACGCTTCAATTAGTACTTGAGAACGATTGGTCTAAGGAAGTAGAGGAAGGAT 256
||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 179 CAGATTCTATGCTTCAATTAGTGCTTGAGAATGATTGGTCTAAGGAAGTAGAGGAAGGAT 238
Query 257 TGAGGAAACCGGATTTGTCTTTAACACACGAGACTGCGATTTACGTTTTGAGGAAATTGG 316
|||||||||| ||| ||||||| |||||||||||||| ||||||||| ||||||||||||
Sbjct 239 TGAGGAAACCTGATATGTCTTTGACACACGAGACTGCAATTTACGTTCTGAGGAAATTGG 298
Query 317 AGAAGTATCCTGAAAAAGCTTATTACTTTCTTGATTGGGTTTTGCGAGATTCAGGGCTTA 376
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 299 AGAAGTATCCTGAAAAAGCTTATTACTTTCTCGATTGGGTTTTGAGAGATTCAGGGCTTA 358
Query 377 GTCCAAGTACTCCACTTTATAGCATTATGTTGAGGATTTTAGTGCAGCAGAGATCTATGA 436
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 GTCCAAGTACTCCACTCTATAGCATTATGTTGAGGATTTTAGTGCAGCAGAGATCAATGA 418
Query 437 AGCGGTTTTGGATGACTCTGAGTGAGATGAAACAAGGAGGGTTTTATTTAGATGAGGATA 496
| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 419 AACGGTTTTGGATGACTCTGAGGGAGATGAAACAAGGAGGGTTTTATTTAGACGAGGATA 478
Query 497 CTTATAAGACTATTTATGGTGAGCTTAATAAGGAGAAATCGAAAGCGGATGCTGTGGCTG 556
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 479 CTTATAAGACTATTTATGGTGAGCTTAGTAAGGAGAAATCGAAAGCTGATGCTGTGGCTG 538
Query 557 TGGCTCATTTTTATGAGAGAATGCTTAAGGAGAATGCTATGTCTGTTGTTGCTGGAGATG 616
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 539 TGGCTCATTTTTATGAGAGAATGCTTAAGGAGAACGCAATGTCTGTTGTTGCTGGAGAGG 598
Query 617 TTTCTGCTGTTGTTACGAAGGTGGATTGGAGTTGTGAGGTTGAGAGGGAATTGCAGGAGA 676
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 599 TTTCTGCTGTTGTTACTAAGGGGGATTGGAGTTGTGAGGTTGAGAGGGAATTGCAGGAGA 658
Query 677 TGAAGCTCGTTTTGTCGGATAATTTTGTTATCAGGGTGTTGAAGGAACTAAGGGAGCATC 736
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||
Sbjct 659 TGAAGCTCGTTTTGTCGGATAATTTTGTGATTAGGGTGTTGAAAGAACTAAGGGAACATC 718
Query 737 CCTTGAAAGCTTTGGCGTTTTTCCATT--G--GGT--TGGTGGCAGTTCTTCTGGTTATC 790
| ||||||||||||||||||||||||| | ||| |||||| ||||||||||||||||
Sbjct 719 CTTTGAAAGCTTTGGCGTTTTTCCATTGGGTTGGTGGTGGTGGTAGTTCTTCTGGTTATC 778
Query 791 AACACAGTACTGTTACTTATAACGCGGCTTTGAGGGTTTTGGCCAGGCCTATTTCGGTTG 850
||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||
Sbjct 779 AACACAGTACTGTTACTTATAACGCAGCTTTGAGGGTTTTGGCTAGGCCTAACTCGGTTG 838
Query 851 CTGAGTTTTGGAGTGTTGTTGATGAAATGAAGACCGCAGGGCATGAGATGGATCTTGACA 910
| |||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 839 CAGAGTTTTGGAGTGTTGTTGATGAAATGAAGACTGCAGGGTATGATATGGATCTTGACA 898
Query 911 CTTATATAAAGGTTTCTAGACAGTTTCAGAAATCTAGAATGATTACTGAGACAGTTAAGC 970
|||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 899 CTTATATAAAGGTTTCAAGGCAGTTTCAGAAATCTAGAATGATGGCTGAGACAGTTAAGC 958
Query 971 TTTATGAATATATGATGGATGGTCCGTTCAAACCATCTATTCAAGATTGTAGTCTTTTGT 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TTTATGAATATATGATGGATGGTCCGTTCAAACCATCTATTCAAGATTGTAGTCTTTTGT 1018
Query 1031 TGAGGTATTTATCGGCTCGTCCCAACCCAGATTTGGATTTGGTGTTTCGGGTTTCAAGGA 1090
||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1019 TGAGGTATTTATCGGGTAGTCCCAATCCAGATTTGGATTTGGTGTTTCGGGTTTCGAGGA 1078
Query 1091 AATATGAATCAACAGGGAAGTCTCTCTCAAAAGCTGTTTATGATGGAATCCACAGGTCTT 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AATATGAATCAACAGGGAAGTCTCTCTCAAAAGCTGTTTATGATGGAATCCACAGGTCTT 1138
Query 1151 TAACCAGTGTAGGTAGGTTTGACGAAGCAGAGGAAATCACGAAGGCTATGAGAAATGCGG 1210
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1139 TAACCAGTGTAGGTAGGTTTGACGAAGCTGAGGAAATCACCAAGGCTATGAGAAATGCGG 1198
Query 1211 GTTATGAGCCAGATAACATCACATACAGCCAACTCGTGTTTGGGCTTTGTAGAGCTAAGA 1270
|||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1199 GTTATGAGCCGGATAACATCACATACAGCCAACTCGTGTTTGGTCTTTGTAAAGCTAAGA 1258
Query 1271 GATTAGAAGAAGCACGCA-GAGTCCTTGATCAAATGGAAGCACAAGGATGCTTTCCCGAC 1329
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GATTAGAAGAAGCACG-AGGAGTCCTTGATCAAATGGAAGCACAAGGATGCTTTCCCGAC 1317
Query 1330 ATAAAGACTTGGACTATTCTGATCCAAGGGCACTGCAAAAACAATGAATTGGATAGGGCC 1389
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1318 ATAAAAACTTGGACTATACTGATCCAAGGGCACTGCAAAAACAATGAATTGGATAAGGCC 1377
Query 1390 TTGGAGTGTTTTGCGAATATGCTAGAGAAAGGGTTTGATATTGACTCTAATCTGCTTGAT 1449
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 TTGGCGTGTTTTGCGAATATGCTAGAGAAAGGGTTTGATATTGACTCTAATCTGCTTGAT 1437
Query 1450 GTCTTGATAGATGGGTTTCTTATCCAAAACAGGA-TCGAGGGGGCAAGCATATTCCTTAT 1508
|||||||||||||||||| ||||||| |||| | |||||||||||||||||||||||||
Sbjct 1438 GTCTTGATAGATGGGTTTGTTATCCACAACA-AATTCGAGGGGGCAAGCATATTCCTTAT 1496
Query 1509 GGAGATGGTGAAAAATGCCAATGTAAAGCCTTGGCAAAGCACTTACAAACGTCTTATAGA 1568
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1497 GGAGATGGTGAAAAATGCCAATGTAAAGCCTTGGCAAAGCACGTACAAACTTCTTATAGA 1556
Query 1569 CAAGCTGCTAGAGATCAAGAAGGGCAAAGAAGCGCTAGATCTTCTTCAGTTGATGAAGAA 1628
|||||||||| ||||||||||| | ||||||| ||||||||||||||| ||||||||||
Sbjct 1557 CAAGCTGCTAAAGATCAAGAAGAGTGAAGAAGCACTAGATCTTCTTCAGATGATGAAGAA 1616
Query 1629 GCAAAATTACCCTGCATACGCAGAAGCTTTTGATGGATACCTTGCAAAGTTTGGGACTTT 1688
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 GCAAAATTACCCTGCGTATGCAGAAGCTTTTGATGGATACCTTGCAAAGTTTGGGACTTT 1676
Query 1689 GGAAGACGCTAAGAAGTTCTTGGATGTGCTAAGCTCCAAGGATTCTCCTTCCTTTGCAGC 1748
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1677 GGAAGACGCTAAGAAGTTCTTGGATGTGCTTAGCTCAAAGGATTCTCCTTCCTTTGCAGC 1736
Query 1749 CTACTTTCATGTCATTGAAGCTTTCTATCGAGAAGGAAGACTCACTGATGCGAAAAATCT 1808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 CTACTTTCATGTCATTGAAGCTTTCTATCGAGAAGGAAGACTCACTGATGCGAAAAATCT 1796
Query 1809 TCTCTTCATATGTCCCCATCACTTTAAAACACACCCTAAAATCTCTGAACTCTTTGGTGC 1868
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1797 TCTCTTCATATGTCCCCATCACTTTAAAACTCACCCTAAAATCTCCGAACTCTTTGGTGC 1856
Query 1869 TGCAGCTTGA 1878
||||||||||
Sbjct 1857 TGCAGCTTGA 1866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94075821330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5