BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg937581 Length=1900 Score E Sequences producing significant alignments: (Bits) Value AT3G48250.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2900 0.0 > AT3G48250.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:17870064-17871929 REVERSE LENGTH=1866 Length=1866 Score = 2900 bits (1570), Expect = 0.0 Identities = 1773/1870 (95%), Gaps = 17/1870 (1%) Strand=Plus/Plus Query 22 ATGTACAGATCAAAGGCAATCCTGTCTTCTCTTCGTA-ACGCTTACTCACAGATCTCTAC 80 ||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||||||| Sbjct 1 ATGTACAGATCAATGGCAATCCTGTCTTCTCTTCG-ACACGCGTACTCACAGATCTCTAC 59 Query 81 TCGATCGTATCTAAGCAGAGCTCAGGTGGGTTTTTCCTCGCACTCGAT-TTCGCCTCTCG 139 |||||||||||||||| || || |||||||||||||||| ||| | | ||||||||||| Sbjct 60 TCGATCGTATCTAAGCCGATCTAAGGTGGGTTTTTCCTCAAACTTG-TCTTCGCCTCTCG 118 Query 140 ATTCATTTGCAA---TCCCTAGTCGATTCCTTTGGAAATTCCGAACCTTTTCTTCGAAAC 196 |||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 119 ATTCATTTGCAATCGTCCCTAGTCGATTTCTTTGGAAATTTCGAACCTTTTCTTCGAAAC 178 Query 197 CAGATTCTACGCTTCAATTAGTACTTGAGAACGATTGGTCTAAGGAAGTAGAGGAAGGAT 256 ||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 179 CAGATTCTATGCTTCAATTAGTGCTTGAGAATGATTGGTCTAAGGAAGTAGAGGAAGGAT 238 Query 257 TGAGGAAACCGGATTTGTCTTTAACACACGAGACTGCGATTTACGTTTTGAGGAAATTGG 316 |||||||||| ||| ||||||| |||||||||||||| ||||||||| |||||||||||| Sbjct 239 TGAGGAAACCTGATATGTCTTTGACACACGAGACTGCAATTTACGTTCTGAGGAAATTGG 298 Query 317 AGAAGTATCCTGAAAAAGCTTATTACTTTCTTGATTGGGTTTTGCGAGATTCAGGGCTTA 376 ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 299 AGAAGTATCCTGAAAAAGCTTATTACTTTCTCGATTGGGTTTTGAGAGATTCAGGGCTTA 358 Query 377 GTCCAAGTACTCCACTTTATAGCATTATGTTGAGGATTTTAGTGCAGCAGAGATCTATGA 436 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 359 GTCCAAGTACTCCACTCTATAGCATTATGTTGAGGATTTTAGTGCAGCAGAGATCAATGA 418 Query 437 AGCGGTTTTGGATGACTCTGAGTGAGATGAAACAAGGAGGGTTTTATTTAGATGAGGATA 496 | |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 419 AACGGTTTTGGATGACTCTGAGGGAGATGAAACAAGGAGGGTTTTATTTAGACGAGGATA 478 Query 497 CTTATAAGACTATTTATGGTGAGCTTAATAAGGAGAAATCGAAAGCGGATGCTGTGGCTG 556 ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 479 CTTATAAGACTATTTATGGTGAGCTTAGTAAGGAGAAATCGAAAGCTGATGCTGTGGCTG 538 Query 557 TGGCTCATTTTTATGAGAGAATGCTTAAGGAGAATGCTATGTCTGTTGTTGCTGGAGATG 616 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | Sbjct 539 TGGCTCATTTTTATGAGAGAATGCTTAAGGAGAACGCAATGTCTGTTGTTGCTGGAGAGG 598 Query 617 TTTCTGCTGTTGTTACGAAGGTGGATTGGAGTTGTGAGGTTGAGAGGGAATTGCAGGAGA 676 |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| Sbjct 599 TTTCTGCTGTTGTTACTAAGGGGGATTGGAGTTGTGAGGTTGAGAGGGAATTGCAGGAGA 658 Query 677 TGAAGCTCGTTTTGTCGGATAATTTTGTTATCAGGGTGTTGAAGGAACTAAGGGAGCATC 736 |||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||| Sbjct 659 TGAAGCTCGTTTTGTCGGATAATTTTGTGATTAGGGTGTTGAAAGAACTAAGGGAACATC 718 Query 737 CCTTGAAAGCTTTGGCGTTTTTCCATT--G--GGT--TGGTGGCAGTTCTTCTGGTTATC 790 | ||||||||||||||||||||||||| | ||| |||||| |||||||||||||||| Sbjct 719 CTTTGAAAGCTTTGGCGTTTTTCCATTGGGTTGGTGGTGGTGGTAGTTCTTCTGGTTATC 778 Query 791 AACACAGTACTGTTACTTATAACGCGGCTTTGAGGGTTTTGGCCAGGCCTATTTCGGTTG 850 ||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| Sbjct 779 AACACAGTACTGTTACTTATAACGCAGCTTTGAGGGTTTTGGCTAGGCCTAACTCGGTTG 838 Query 851 CTGAGTTTTGGAGTGTTGTTGATGAAATGAAGACCGCAGGGCATGAGATGGATCTTGACA 910 | |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| Sbjct 839 CAGAGTTTTGGAGTGTTGTTGATGAAATGAAGACTGCAGGGTATGATATGGATCTTGACA 898 Query 911 CTTATATAAAGGTTTCTAGACAGTTTCAGAAATCTAGAATGATTACTGAGACAGTTAAGC 970 |||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| Sbjct 899 CTTATATAAAGGTTTCAAGGCAGTTTCAGAAATCTAGAATGATGGCTGAGACAGTTAAGC 958 Query 971 TTTATGAATATATGATGGATGGTCCGTTCAAACCATCTATTCAAGATTGTAGTCTTTTGT 1030 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 TTTATGAATATATGATGGATGGTCCGTTCAAACCATCTATTCAAGATTGTAGTCTTTTGT 1018 Query 1031 TGAGGTATTTATCGGCTCGTCCCAACCCAGATTTGGATTTGGTGTTTCGGGTTTCAAGGA 1090 ||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1019 TGAGGTATTTATCGGGTAGTCCCAATCCAGATTTGGATTTGGTGTTTCGGGTTTCGAGGA 1078 Query 1091 AATATGAATCAACAGGGAAGTCTCTCTCAAAAGCTGTTTATGATGGAATCCACAGGTCTT 1150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 AATATGAATCAACAGGGAAGTCTCTCTCAAAAGCTGTTTATGATGGAATCCACAGGTCTT 1138 Query 1151 TAACCAGTGTAGGTAGGTTTGACGAAGCAGAGGAAATCACGAAGGCTATGAGAAATGCGG 1210 |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1139 TAACCAGTGTAGGTAGGTTTGACGAAGCTGAGGAAATCACCAAGGCTATGAGAAATGCGG 1198 Query 1211 GTTATGAGCCAGATAACATCACATACAGCCAACTCGTGTTTGGGCTTTGTAGAGCTAAGA 1270 |||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 1199 GTTATGAGCCGGATAACATCACATACAGCCAACTCGTGTTTGGTCTTTGTAAAGCTAAGA 1258 Query 1271 GATTAGAAGAAGCACGCA-GAGTCCTTGATCAAATGGAAGCACAAGGATGCTTTCCCGAC 1329 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 GATTAGAAGAAGCACG-AGGAGTCCTTGATCAAATGGAAGCACAAGGATGCTTTCCCGAC 1317 Query 1330 ATAAAGACTTGGACTATTCTGATCCAAGGGCACTGCAAAAACAATGAATTGGATAGGGCC 1389 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||| Sbjct 1318 ATAAAAACTTGGACTATACTGATCCAAGGGCACTGCAAAAACAATGAATTGGATAAGGCC 1377 Query 1390 TTGGAGTGTTTTGCGAATATGCTAGAGAAAGGGTTTGATATTGACTCTAATCTGCTTGAT 1449 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 TTGGCGTGTTTTGCGAATATGCTAGAGAAAGGGTTTGATATTGACTCTAATCTGCTTGAT 1437 Query 1450 GTCTTGATAGATGGGTTTCTTATCCAAAACAGGA-TCGAGGGGGCAAGCATATTCCTTAT 1508 |||||||||||||||||| ||||||| |||| | ||||||||||||||||||||||||| Sbjct 1438 GTCTTGATAGATGGGTTTGTTATCCACAACA-AATTCGAGGGGGCAAGCATATTCCTTAT 1496 Query 1509 GGAGATGGTGAAAAATGCCAATGTAAAGCCTTGGCAAAGCACTTACAAACGTCTTATAGA 1568 |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| Sbjct 1497 GGAGATGGTGAAAAATGCCAATGTAAAGCCTTGGCAAAGCACGTACAAACTTCTTATAGA 1556 Query 1569 CAAGCTGCTAGAGATCAAGAAGGGCAAAGAAGCGCTAGATCTTCTTCAGTTGATGAAGAA 1628 |||||||||| ||||||||||| | ||||||| ||||||||||||||| |||||||||| Sbjct 1557 CAAGCTGCTAAAGATCAAGAAGAGTGAAGAAGCACTAGATCTTCTTCAGATGATGAAGAA 1616 Query 1629 GCAAAATTACCCTGCATACGCAGAAGCTTTTGATGGATACCTTGCAAAGTTTGGGACTTT 1688 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1617 GCAAAATTACCCTGCGTATGCAGAAGCTTTTGATGGATACCTTGCAAAGTTTGGGACTTT 1676 Query 1689 GGAAGACGCTAAGAAGTTCTTGGATGTGCTAAGCTCCAAGGATTCTCCTTCCTTTGCAGC 1748 |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct 1677 GGAAGACGCTAAGAAGTTCTTGGATGTGCTTAGCTCAAAGGATTCTCCTTCCTTTGCAGC 1736 Query 1749 CTACTTTCATGTCATTGAAGCTTTCTATCGAGAAGGAAGACTCACTGATGCGAAAAATCT 1808 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1737 CTACTTTCATGTCATTGAAGCTTTCTATCGAGAAGGAAGACTCACTGATGCGAAAAATCT 1796 Query 1809 TCTCTTCATATGTCCCCATCACTTTAAAACACACCCTAAAATCTCTGAACTCTTTGGTGC 1868 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 1797 TCTCTTCATATGTCCCCATCACTTTAAAACTCACCCTAAAATCTCCGAACTCTTTGGTGC 1856 Query 1869 TGCAGCTTGA 1878 |||||||||| Sbjct 1857 TGCAGCTTGA 1866 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 94075821330 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5