BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937589
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48330.1 | Symbols: PIMT1, ATPIMT1 | protein-l-isoaspartate ... 1140 0.0
> AT3G48330.1 | Symbols: PIMT1, ATPIMT1 | protein-l-isoaspartate
methyltransferase 1 | chr3:17892795-17893975 REVERSE LENGTH=867
Length=867
Score = 1140 bits (617), Expect = 0.0
Identities = 682/714 (96%), Gaps = 2/714 (0%)
Strand=Plus/Plus
Query 21 ATGAAGCAATTCTGGAGTCCAAGAAGTATCAACAAGAACAAAGCTATGGTGGAGAAGCTG 80
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1 ATGAAGCAATTCTGGAGTCCAAGTAGTATCAACAAGAACAAAGCTATGGTTGAGAATCTG 60
Query 81 CAAAATCATGGTATAGTTACGTCAGATGAAGTTGCTAAAGCTATGGAGGCTGTGGATAGA 140
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAAAATCATGGTATAGTTACTTCAGATGAAGTTGCTAAAGCTATGGAGGCTGTGGATAGA 120
Query 141 GGCGTATTTGTACCAGATCGTTCCTCTGCTTATATAGATAGTCCCATGTCTATTGGGTAT 200
|||||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||
Sbjct 121 GGCGTATTTGTAACAGATCGTTCCTCTGCTTATGTTGATAGTCCCATGTCTATTGGTTAT 180
Query 201 AATGTGACTATATCAGCACCTCATATGCACGCAATGTGTCTTCAACTTCTTGAAAAGCAT 260
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 181 AATGTGACTATATCAGCTCCTCATATGCATGCAATGTGTCTTCAACTTCTTGAAAAACAT 240
Query 261 TTGAAACCGGGAATGCGTGTTCTTGATGTCGGCTCGGGGACTGGGTACTTAACGGCTTGC 320
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct 241 TTGAAACCGGGAATGCGTGTACTTGATGTTGGCTCGGGGACCGGGTACTTAACTGCTTGC 300
Query 321 TTTGCGGTTATGGTTGGATCCGAAGGGCGTGCTATTGGTGTGGAACATATTCCTGAATTG 380
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTGCGGTTATGGTTGGAACCGAAGGGCGTGCTATTGGTGTGGAACATATTCCTGAATTG 360
Query 381 GTGGCTTCTTCTGTTAAGAATATTGAAGCGAGTGCTGCTTCGCCATTGCTGAAAGAAGGG 440
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GTGGCTTCTTCTGTTAAGAATATTGAAGCGAGTGCTGCTTCGCCATTTCTGAAAGAAGGG 420
Query 441 TCTCTTGCTGTTCATGTTGGCGATGGGAGGAAAGGATGGGCTGAGTTTGCTCCTTATGAT 500
|||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||
Sbjct 421 TCTCTTGCTGTTCATGTTGGTGATGGGAGGCAAGGATGGGCTGAGTTTGCTCCGTATGAT 480
Query 501 GCTATTCATGTCGGAGCAGCAGCACCGGAGATTCCAGAGGCATTGATTGATCAATTGAAA 560
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 481 GCTATTCACGTCGGAGCAGCAGCACCGGAGATCCCAGAGGCGTTGATTGATCAGTTGAAG 540
Query 561 CCTGGTGGGAGACTGGTGATCCCGGTTGGGAACATATTCCAAGATCTGCAAGTGGTGGAC 620
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCCGGTGGGAGACTGGTGATTCCGGTTGGGAACATATTCCAAGATCTGCAAGTGGTGGAT 600
Query 621 AAGAACTCAGATGGTTCGGTTAGCATCAAGAATGAAACTTCAGTTCGTTATGTTCCTTTG 680
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 AAGAACTCAGATGGTTCTGTTAGCATCAAGGATGAAACTTCAGTTCGTTATGTTCCTTTG 660
Query 681 ACTAGCCGTGAAGCCCAGCTGAGAGGGGACTGATGAAT--GCTCGTTGTACAGA 732
|||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 661 ACTAGCCGTGAAGCCCAGCTGAGAGGGGACTGATGAATATGCTCGTTGTACAGA 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35565776076
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5