BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937601
Length=1385
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48440.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 2047 0.0
AT5G63260.2 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 520 2e-146
> AT3G48440.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr3:17941402-17943576 FORWARD LENGTH=1347
Length=1347
Score = 2047 bits (1108), Expect = 0.0
Identities = 1281/1360 (94%), Gaps = 29/1360 (2%)
Strand=Plus/Plus
Query 22 ATGGTCAATTCCGAAGAAACTGCAGATGGGTTTGAGCCAAAACCTGTTTCTCAATCCTAT 81
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 1 ATGGTCAATTCCGAAGAAATTGCAGATGGGTTTGAGCCAAAACCTGTTTCTCGATCTTAT 60
Query 82 TCTGGTGATTCATCTGC-TGATCGATCTCTTTCTGATCTCAATAACGCAGCGAAGGACTT 140
||||||||||||||| | |||||| |||||||| ||||||||| |||||||| |||||||
Sbjct 61 TCTGGTGATTCATCT-CATGATCGTTCTCTTTCCGATCTCAATCACGCAGCGGAGGACTT 119
Query 141 GAGTGATAAGCTTAAGAATGTGGGTTTGGATGAAGTTACGAAAGAGAAGAGTGAGACGAT 200
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 120 GAGTGATAAGCTTAAGAATGTGGGTTTGAATGAAGTTACGAAAGAGCAGAGTGAGAAGAT 179
Query 201 TATGAGTGTCGCTGAGAGTTATGGAGGTTTAGATTCGAATGTAGTAGTCACCAGCAAT-- 258
||||||||| |||||||| ||||||||||||||||||||| ||||||||||| ||||
Sbjct 180 GATGAGTGTCTCTGAGAGTAATGGAGGTTTAGATTCGAATGCAGTAGTCACCATCAATCA 239
Query 259 -G-AG--GAAGAAGAAGAAG-A-ACA-AGATGGTTATGATTATGGTGATGGTTGGAGCGA 311
| || ||||||||||||| | ||| ||||||||||| |||||||||||||||||||||
Sbjct 240 GGAAGAAGAAGAAGAAGAAGAAGACAGAGATGGTTATGGTTATGGTGATGGTTGGAGCGA 299
Query 312 GAACGAGAGTGAGATGAGAGAAGTTGTGTATCCAGTGAGGCCAGGAGCAGAGGATTGTTC 371
|||| || ||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 GAAC--GA--GAG-T--GAGAA--TGTGTATCCAGTGAGGCCAGGAGCAGAGGATTGTTC 350
Query 372 TTTTTATATGAGAACAGGGAGCTGCAAATTCGGATCTAGCTGCAAATTCAATCATCCTCT 431
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 351 TTTTTATATGAGAACAGGGAGCTGCAAATTCGGATCCAGTTGCAAATTCAATCATCCTCT 410
Query 432 TGCCAGAAAAATCCAAATTGCTAGGGATAATAAAGTGAGAGAAAAGGAAGAGGATGGTGG 491
|||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 411 TGCCAGAAAATTCCAAATTGCTAGGGATAATAAAGTAAGAGAAAAGGAAGATGATGGTGG 470
Query 492 TAAATTGGGACTGATTGATTGCAAGTATTACTTTAGGACTGGAGGGTGCAAATATGGAGA 551
||||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 471 TAAATTGGGGCTGATAGATTGCAAGTATTACTTTAGGACTGGAGGGTGTAAGTATGGAGA 530
Query 552 AATTTGTAGATTCAACCATACCTTACCAAAGTCTTGTCTGGCCTCACCACCCGAGCTTAA 611
|| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||
Sbjct 531 AACTTGTAGATTCAACCATACCATACCAAAGTCTGGTCTGGCCTCAGCACCCGAGCTTAA 590
Query 612 CTTCCTTGGCCTTCCTATCAGACCGGGAGAAGTAGAATGCCCTTATTACATGCGCAATGG 671
|||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 591 CTTCCTCGGCCTTCCTCTCAGACCGGGAGAAGTAGAATGCCCTTACTACATGCGCAATGG 650
Query 672 CTCCTGCAAAT-TCGGAGCTGAGTGCAAATTTAATCATCCTGATCCTACAACCATCGGAG 730
||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 651 CTCCTGCAAATAT-GGAGCTGAGTGCAAATTCAATCATCCTGATCCTACAACCATCGGAG 709
Query 731 GAACTGACTCCCTATCATTTCATGGTAATAATGATGTATCCATTGGAACATTTTCTCCAA 790
|||||||||||| |||||||| ||||||||||| |||||||||||| |||||||||||||
Sbjct 710 GAACTGACTCCCCATCATTTCGTGGTAATAATGGTGTATCCATTGGTACATTTTCTCCAA 769
Query 791 AGTCTACATTCCAAGCAAGTTCAACTTCCTGGACTTCACCAAGGCATGTGAATGGTACAT 850
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 770 AGGCTACATTCCAAGCAAGTTCAACTTCCTGGTCTTCACCAAGGCATGTGAATGGTACAT 829
Query 851 CTCCTTTTATTCCAGTCATGCTGTCACAAACTCATGGAGTTCCATCTCAAACTCCGGAAT 910
||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||| || |
Sbjct 830 CTCCTTTTATTCCAGTCATGCTGTCACAAACTCATGGGGTTACATCTCAAAATCCAGAGT 889
Query 911 GGAATGGCTATCAGGCTTCTGTGTATTCATCTGAAAGGGGTGTGTTTTCTCCTTCCACCA 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GGAATGGCTATCAGGCTTCTGTGTATTCATCTGAAAGGGGTGTGTTTTCTCCTTCCACCA 949
Query 971 CATACCTTATGAACAATTTATCAGCTGAAACAAGTATG-T--TGTCACAATACCGACATC 1027
||||||| |||||||||| ||||||||||||||||||| | ||||||||||||||||||
Sbjct 950 CATACCTAATGAACAATTCATCAGCTGAAACAAGTATGTTGCTGTCACAATACCGACATC 1009
Query 1028 AAATGCCTGCTGAAGAATTTCCAGAACGTCCAGACCAACCTGAGTGCAGTTATTATATGA 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 AAATGCCTGCTGAAGAATTTCCAGAACGTCCAGACCAACCTGAGTGCAGTTATTATATGA 1069
Query 1088 AAACTGGGGACTGTAAGTTCAAATTCAATTGCAAATACCACCATCCTAAGAATCGAT-TG 1146
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1070 AAACTGGGGACTGCAAGTTCAAATTCAATTGCAAATACCACCATCCTAAGAATCG-TCTG 1128
Query 1147 CCGAAGCTGCCTCCTTATGCTCTCAATGACAAGGGTTTACCCCTTAGACCTGATCAAAAC 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 CCGAAGCTGCCTCCTTATGCTCTCAATGACAAGGGTTTACCCCTTAGACCTGATCAAAAC 1188
Query 1207 ATCTGCACATATTACAGTCGGTACGGCATCTGCAAATTCGGTCCAGCTTGTAGATTCGAC 1266
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1189 ATTTGCACATATTACAGTCGATACGGCATCTGCAAATTCGGTCCAGCTTGTAGATTTGAC 1248
Query 1267 CATTCCGTCCAGCCGTC-ATATTCGACAGAAAGCTCCCAGGCCATTGTAGAACCTCCTCA 1325
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 CATTCCGTCCAGCC-TCCATATTCGACAGAAAGCTCCCAGGCCATTGTAGAACCTCCTCA 1307
Query 1326 GGTCAGTGCAAATGGGAATGAAAGTGACGGTTGGAATTGA 1365
||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 GGTCAGTGCAAATGGGAATGAAAGTGACGGTTGGAATTGA 1347
> AT5G63260.2 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr5:25361747-25364769 FORWARD LENGTH=1825
Length=1825
Score = 520 bits (281), Expect = 2e-146
Identities = 698/892 (78%), Gaps = 58/892 (7%)
Strand=Plus/Plus
Query 502 CTGATTGATTGCAAGTATTACTTTAGGACTGGAGGGTGCAAATATGGAGAAAT-TTGTAG 560
||||| || || ||||| ||||||||||||||||||||||||||||||| | | ||||||
Sbjct 652 CTGATGGAGTGTAAGTACTACTTTAGGACTGGAGGGTGCAAATATGGAG-AGTCTTGTAG 710
Query 561 ATTCAACCATACCT-TACCAA-AGT-CTTGTCTGGCCTCACCACCCGAGCTTAACTTCCT 617
||||| || || | | || | | || || ||||||| ||| ||||||||||||||
Sbjct 711 ATTCAGCC--ACATGAAAGAACA-TAATTCTCCGGCCTCAGTACCAGAGCTTAACTTCCT 767
Query 618 TGGCCTTCCTATCAGACCGGGAGAAGTA-GAATGCCC-TTATTACATGCGCAATGGCTCC 675
|||||||||||||||||||||||| | | |||||||| || | |||||||||||||||||
Sbjct 768 TGGCCTTCCTATCAGACCGGGAGA-GAAAGAATGCCCGTTCT-ACATGCGCAATGGCTCC 825
Query 676 TGCAAATTCGGAGCTGAGTGCAAATTTAATCATCCTGATCCTACAACCATCGGAGGAACT 735
||||| || ||| | || ||||||||||||||||||||||||||| | ||||||||| |
Sbjct 826 TGCAAGTTTGGATCAGACTGCAAATTTAATCATCCTGATCCTACAGCTATCGGAGGAGTT 885
Query 736 GA--CTCCCTATCATTTCATGGTAATAATGATGTATCCATTGGAACATTTTCTCCAAAGT 793
|| |||||| | | | ||||||||| | || |||| || || | ||||||
Sbjct 886 GATTCTCCCT-TG-TACCGTGGTAATAACGGTGGATCC-TT------TTC-C-CCAAAGG 934
Query 794 CTACATTCCAAGCAAGTTCAACTTCCTGGACTTCACCAAGGCATGTGAATGGTAC----A 849
| ||| |||||||||||||||||| ||| ||||| | || ||| |||||||||| |
Sbjct 935 CCCCATCCCAAGCAAGTTCAACTTCTTGGTCTTCAACGAGACATATGAATGGTACTGGTA 994
Query 850 -T-CTCCTTTTATTCCAGTC-ATGCTGTCACAAACTCATGGAGTTCCATCTCAAACTCCG 906
| |||||||||||||| || ||| | | || | || ||||||| || ||||| || |
Sbjct 995 CTGCTCCTTTTATTCCA-TCCATGTTCCCCCATAGTCGTGGAGTTACACCTCAAGCTTCA 1053
Query 907 GAATGGAATGGCTATCAGGCTTCTG-TG--TATTCATCTGAAAGGGGTGTGTTTTCTCCT 963
|| |||||||| |||||||| ||| || ||| || | |||||| || || |||||
Sbjct 1054 GACTGGAATGGGTATCAGGCGTCTTCTGCCTATCCACCAGAAAGGAGTCCACTTGCTCCT 1113
Query 964 TCCACCACATACCTTATGAACAATTTATCAGCTGAAACAAGTATG-TTGTCACAATACCG 1022
||| | | |||| ||||||||| || |||||||| ||| | || ||||||||||
Sbjct 1114 TCCTC-A--TACCAGGTGAACAATTCATTGGCTGAAACTAGT-TCATTCTCACAATACCA 1169
Query 1023 ACATCAAATGCCTGCTGAAGAATTTCCAGAACGTCCAGACCAACCTGAGTGCAGTTATTA 1082
||| || ||| ||| ||| ||||| |||||||| || || ||||| ||||||| ||||||
Sbjct 1170 ACACCAGATGTCTGTTGAGGAATTCCCAGAACGCCCGGATCAACCAGAGTGCACTTATTA 1229
Query 1083 TATGAAAACTGGGGACTGTAAGTTCAAAT-TCAATTGCAAATACCACCATCCTAAGAATC 1141
| | ||||||||||||||||||||||||| | ||| |||||||||| ||||| || |||
Sbjct 1230 TCTTAAAACTGGGGACTGTAAGTTCAAATATAAAT-GCAAATACCATCATCCGAAAAATA 1288
Query 1142 GATTGCCGAAGCT-GCCTCC-TTATGCTCTCAATGACAAGGGTTTACCCCTTAGACCTGA 1199
|||||||||||| || | | || | || ||||||||||||| || ||||| ||||||||
Sbjct 1289 GATTGCCGAAGCAAGC-TGCATTCT-CTTTCAATGACAAGGGCTTGCCCCTAAGACCTGA 1346
Query 1200 TCAAAACATCTGCACATATTACAGTCGGTACGGCATCTGCAAATTCGGTCCAGCTTGTAG 1259
||| | ||| |||||| | ||||| || || |||||||||||||| ||||||||||||||
Sbjct 1347 TCAGAGCATGTGCACACACTACAGCCGATATGGCATCTGCAAATTTGGTCCAGCTTGTAG 1406
Query 1260 ATTCGACCATTCCGT-CCAGCCGTCATAT-TCGAC-AGAAAGCTCCCAGGCCATTGTAGA 1316
||| || |||||| | || ||| ||| | ||| | || | ||||||| || |||||
Sbjct 1407 ATTTGATCATTCCATACC-GCCCACAT-TCTCGCCCAGCA-GCTCCCAAACC---GTAGA 1460
Query 1317 ACCTCCTCAGGTCAGTGCAAATGGGAATGAA-AGTGACGGTTGGAATTGACA 1367
| ||| ||| || | || || || |||||| | |||| | ||| |||||||
Sbjct 1461 AGCTCGTCAAGTTGGCGCTAACGGAAATGAAGA-TGACAGCTGGCATTGACA 1511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68222540655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5