BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937609
Length=2068
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48500.2 | Symbols: PDE312, PTAC10 | Nucleic acid-binding, O... 1751 0.0
> AT3G48500.2 | Symbols: PDE312, PTAC10 | Nucleic acid-binding,
OB-fold-like protein | chr3:17962163-17965613 FORWARD LENGTH=2345
Length=2345
Score = 1751 bits (948), Expect = 0.0
Identities = 1028/1065 (97%), Gaps = 11/1065 (1%)
Strand=Plus/Plus
Query 1003 TCACGGCAAAAAGAGATCCATACCGATTTCGGTTTCCCTTGGAGTTGCGTTTCGTCCATC 1062
||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1105 TCA-GGCAAAAAGAGATCCATACCGGTTTCGGTTTCCCTTGGAGTTGCGCTTCGTCCATC 1163
Query 1063 CCAACATAGATCACATGATCTTTAATAAATTTGACTTCCCACCAATATTCCATCGTGATG 1122
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 CTAACATAGATCACATGATATTTAATAAATTTGACTTCCCACCAATATTCCATCGTGATG 1223
Query 1123 GGGATACTAATCCCGATGAAATACGGCGAGATTGTGGAAGACCTCCAGAACCTAGAAAAG 1182
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1224 GGGATACTAATCCAGATGAGATACGGCGAGATTGTGGAAGACCTCCTGAACCTAGAAAAG 1283
Query 1183 ATCCAGGATCAAAACCAGAGGAGGAAGGGCTGTTCTCTGATCACCCGTATGTCGACAAGT 1242
||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1284 ATCCAGGATCAAAGCCAGAGGAGGAAGGGCTGCTCTCTGATCACCCTTATGTCGACAAGT 1343
Query 1243 TGTGGCAGATACATGTAGCTGAGCAAATGATTTTGGATGATTACGAAGCTAACCCTGGAA 1302
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1344 TGTGGCAGATACATGTAGCTGAGCAAATGATTTTGGGTGATTACGAAGCTAACCCTGCAA 1403
Query 1303 AATACAAAGGCAAAAAGCTATCAGAATTATCTGATGATGAAGGCTTTGATGAACAAAAGG 1362
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1404 AATACGAAGGCAAAAAGCTATCAGAATTATCTGATGATGAAGACTTTGATGAACAAAAGG 1463
Query 1363 ATATCGAGTATGGCGAAGCTTATTATAAGAAAACCAAATTGCCAAAAGTGATTCTGAAAA 1422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1464 ATATCGAGTATGGCGAAGCTTATTATAAGAAAACCAAATTGCCAAAAGTGATTCTGAAAA 1523
Query 1423 CCAGTGTCAAGGAACTTGACTTAGAGGCTGCATTGACCGAGCGCCAGCACCACAATAAAC 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 CCAGTGTCAAGGAACTTGACTTAGAGGCTGCATTGACCGAGCGCCAGCACCACAATAAAC 1583
Query 1483 TAATGATGGAAGCTAAAGCAAGAGGAGAAGGATACAAAATTGACAAGCTAAGACGAAATA 1542
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1584 TAATGATGGAAGCTAAAGCAAGAGGAGAAGGATACAAAATTGACAAGCTCAGACGAAATA 1643
Query 1543 TAGAGATGGACGAGTATGATTTCTTACACTGGCGCCGATCTTTGGAGGAAAGAGAAGCAT 1602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 TAGAGATGGACGAGTATGATTTCTTACACTGGCGCCGATCTTTGGAGGAAAGAGAAGCAT 1703
Query 1603 TGCTCAGAGATATCAGCTCTCGTCAAGCACTTGGTTTACCATTGGAGGAACCAGGGAGGT 1662
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1704 TGCTCAGAGATATCAGCTCTCGGCAAGCACTTGGTTTACCATTGGAGGAACCAGGGAGGT 1763
Query 1663 ATAAGCCAGGAAGCTTCTTTGGGAAAGACCAGTACGATCCAACAAGTGCACTATATCAGT 1722
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1764 ACAAGCCAGGAAGCTTCTTTGGGAAAGACCAGTACGATCCAACAAGTGCATTATATCAGT 1823
Query 1723 ATGACTACTGGGGAGAGCCAAAGAACTCAGAGATTAGCAAGCAAGAGAGAATGAAGGATG 1782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1824 ATGACTACTGGGGAGAGCCAAAGAACTCAGAGATTAGCAAGCAAGAGAGAATGAAGGATG 1883
Query 1783 CACACAACAAATCCATTGTTGGGAAAGGCAATGTGTGGTATGACATGTCTTACGATGATG 1842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1884 CACACAACAAATCCATTGTTGGGAAAGGCAATGTGTGGTATGACATGTCTTACGATGATG 1943
Query 1843 CCATTAAACAGAAAATAGAGAaaagaaaagaagggtctaccttggcgagtcaagaagaag 1902
| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1944 CGATTAAGCAGACAATAGAGAAAAGAAAAGAAGGGTCTACCTTGGCGAGTCAAGAAGAAG 2003
Query 1903 aaacagagtcagaggaagaagaagaCGACgatgatgatgatgatgatTTTGACGATTTTG 1962
||||||||||||||||||||||||| | ||||| |||||| | || ||||||||||
Sbjct 2004 AAACAGAGTCAGAGGAAGAAGAAGA-G--GATGACGATGAT--T--TT--GACGATTTTG 2054
Query 1963 ACTACAGCATTCTGAGTGATGAGAGTAGTATCGGTTACTCAGAACAGCAACCTCTTGTTA 2022
|||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 2055 ACTATAGCATTCTGAGTGATGAGAGCAGTATCGGTTACTCGGAACAGCAACCTCTTGTTA 2114
Query 2023 ACGGTACTCAAGTCTTGACAGACTGATGTTTAAACG-AAAGTAAA 2066
|||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2115 ACGGTACTCAAGTCTTGACAGACTGATGTTTAAAAGGAAAGTAAA 2159
Score = 1568 bits (849), Expect = 0.0
Identities = 960/1011 (95%), Gaps = 18/1011 (2%)
Strand=Plus/Plus
Query 1 TGAAGAGGTG-CGAATGAATCATGCAGATTTGCCAAACCAAGCTCAATTTCACTTTCCCT 59
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 27 TGAAGA-GTGACGAATGAATCATGCAGATTTGCCAAACCAAGCTCAATTTCACTTTCCCT 85
Query 60 AATCCCACAAACCCTAATTTCTGCAAACCCAAATCTCTCTCCGCCGGATTTCAATGGCTT 119
||||||||||||||||||||||||||||||||| |||| | | || || | |
Sbjct 86 AATCCCACAAACCCTAATTTCTGCAAACCCAAAGCTCT-T-CAATGG---TC-A---C-- 134
Query 120 CAACCTCGTCGTATCA-CCTTACCGCCTTGCCGTGGATTCAGCTCCGATGAATTCCCCGT 178
| |||||||| || | |||| | |||||| |||||||||||||||||||||||||| ||
Sbjct 135 C-GCCTCGTCGCAT-ATCCTTGCTGCCTTGTCGTGGATTCAGCTCCGATGAATTCCCAGT 192
Query 179 CGACGAAACCTTCCTCGAGAAATTCGGACCAAAGGACAAAGACACAGAAGATGAAGCTCG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 CGACGAAACCTTCCTCGAGAAATTCGGACCAAAGGACAAAGACACAGAAGATGAAGCTCG 252
Query 239 TA-GACGTAACTGGATCGAACGTGGTTGGGCTCCATGGGAAGAGATTCTCACACCAGAAG 297
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 -ACGACGTAACTGGATCGAACGTGGTTGGGCTCCATGGGAAGAGATTCTCACACCAGAAG 311
Query 298 CTGATTTCGCTCGTAAATCGCTTAACGAAGGTGAAGAAGTTCCGCTTCAATCGCCGGAAG 357
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 312 CTGATTTCGCTCGTAAATCTCTCAACGAAGGTGAAGAAGTTCCGCTTCAATCGCCGGAAG 371
Query 358 CGATCGAAGCGTTTAAGATGCTGAGACCGTCGTATAGGAAGAAGAAGATTAAGGAGATGG 417
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 372 CGATCGAAGCGTTTAAGATGCTGAGACCATCGTATAGGAAGAAGAAGATTAAGGAGATGG 431
Query 418 GGATAACGGAAGATGAATGGTATGCTAAGCAGTTTGAGATTAGAGGTGATAAACCACCGC 477
||||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 432 GGATAACAGAAGACGAATGGTATGCAAAGCAATTTGAGATTAGAGGTGATAAACCACCTC 491
Query 478 CTTTAGAAACATCGTGGGCTGGTCCGATGGTTCTTAGGCAAATTCCGCCGCGTGATTGGC 537
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 CTTTAGAAACATCTTGGGCTGGTCCGATGGTTCTTAGGCAAATTCCGCCGCGTGATTGGC 551
Query 538 CTCCGAGAGGTTGGGAAGTTGATAGGAAGGAGCTGGAGTTTATTAGGGAAGCTCATAAGT 597
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 CTCCCAGAGGTTGGGAAGTTGATAGGAAGGAGCTGGAGTTTATTAGGGAAGCTCATAAGT 611
Query 598 TAATGGCTGAAAGAGTTTGGCTTGAGGATTTGGATAAGGATTTGAGAACTGGAGAAGATG 657
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 612 TAATGGCTGAAAGAGTTTGGCTTGAGGATTTGGATAAGGATTTGAGAGTTGGTGAAGATG 671
Query 658 CTACTGTTGATAAGATGTGTTTGGAGAGGTTTAAGGTTTTCTTGAAACAATACAATGAAT 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 672 CTACTGTTGATAAGATGTGTTTGGAGAGGTTTAAGGTTTTCTTGAAACAATACAAGGAAT 731
Query 718 GGGTTGAAGCTAATAAAGATAGGTTGGAGGAAGAATCTTACAAGCACGATCAGGATTTTT 777
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 732 GGGTTGAAGATAATAAAGATAGGTTGGAGGAAGAATCTTACAAGCTCGATCAGGATTTTT 791
Query 778 ATCCGGGTAGAAGGAAAAGAGGGAAGGATTACGAAGACGGGATGTATGAGCTTCCCTTTT 837
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 792 ATCCGGGTAGGAGGAAAAGAGGGAAGGATTACGAAGATGGGATGTATGAGCTTCCCTTTT 851
Query 838 ACTATCCAGGGATGATTTGTGAAGGCACAGTTACCACTTTACATCTGTATCAGGGTGCAT 897
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
Sbjct 852 ACTATCCAGGGATGGTTTGTGAAGGCACAGTTACCACTTTACATCTGTATCAGGGAGCGT 911
Query 898 TTGTTGACATTGGAGGTGTTCATGAAGGGTGGGTACCTATAAAAGGTAATGACTGGTTTT 957
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 912 TTGTTGACATTGGAGGTGTTCATGAAGGATGGGTACCTATAAAAGGTAATGACTGGTTTT 971
Query 958 GGATCCGGCATTTCATAAAAGTTGGGATGCATGTTATCGTTGAGATCACGG 1008
||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 972 GGATCCGGCATTTCATAAAAGTTGGGATGCATGTTATCGTTGAAATCACGG 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102509512890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5