BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937613
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48530.1 | Symbols: KING1 | SNF1-related protein kinase regu... 2405 0.0
> AT3G48530.1 | Symbols: KING1 | SNF1-related protein kinase regulatory
subunit gamma 1 | chr3:17987378-17989763 FORWARD LENGTH=1627
Length=1627
Score = 2405 bits (1302), Expect = 0.0
Identities = 1410/1462 (96%), Gaps = 8/1462 (1%)
Strand=Plus/Plus
Query 2 ATCTTTTC-GAGTTACCGGATAATAAAGACGGTACCTTTTTCACTGTTGACTTACCGGAA 60
||| |||| | ||||||||| ||||||||||||||| ||||||||||||||||| ||||
Sbjct 121 ATC-TTTCTGTGTTACCGGAGAATAAAGACGGTACC-TTTTCACTGTTGACTTAACGGAG 178
Query 61 AAGATGGCGACTGTGCCGGAGATAAAGATAATGAGAAGCGAGAGCTTGGGTCATCGGAGT 120
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 179 AAGATGGCGACTGTTCCGGAGATAAAGATAATGAGAAGCGAGAGCTTAGGTCATCGGAGT 238
Query 121 GACGTGTCGAGCCCGGAAGCGAAGCTAGGGATGCGTGTGGAAGATCTCTGGGATGAGCAG 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 239 GACGTGTCGAGCCCGGAAGCTAAGCTAGGGATGCGTGTGGAAGATCTCTGGGATGAGCAG 298
Query 181 AAACCACAGCTCAGTCCTAACGAGAAGCTCAACGCTTGCTTCGAGAGCATCCCTGTTTCT 240
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 299 AAACCACAGCTCAGTCCTAACGAGAAGCTCAACGCTTGCTTTGAGAGCATCCCTGTCTCT 358
Query 241 GCTTTCCCTCTCTCATCTGATTCACAAGATATTGAGATAAGATCAGACACAAGTTTGGCT 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GCTTTCCCTCTCTCTTCTGATTCACAAGATATTGAGATAAGATCAGACACAAGTTTGGCT 418
Query 301 GAAGCTGTTCAGACACTATCAAAATTCAAGGTATTGAGTGCGCCTGTTGTAGATGTTGAT 360
|||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 419 GAAGCTGTTCAGACACTATCGAAATTCAAGGTCTTGAGCGCGCCTGTTGTAGATGTTGAT 478
Query 361 GCGCCTGAAGATGCCAGCTGGATTGATCGCTACATCGGTATTGTGGAGTTTCCAGGCATT 420
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 479 GCGCCTGAAGATGCCAGTTGGATTGATCGCTACATCGGTATTGTGGAATTTCCAGGCATT 538
Query 421 GTTGTCTGGCTTTTGCATCAGTTGGAACCTCCATCTCCAAGGAGCCCTGCTGTTGCAGCT 480
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 539 GTTGTCTGGCTTTTGCATCAGTTGGAGCCACCATCTCCAAGGAGCCCTGCTGTTGCAGCT 598
Query 481 TCAAATGGATTTTCTCATGATTTCACCACCGATGTTCTGGATAACGGAGATTCAGCAGTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCAAATGGATTTTCTCATGATTTCACCACCGATGTTCTGGATAACGGAGATTCAGCAGTA 658
Query 541 ACTTCTGGAAACTTCTTTGAGGTCCTTACTTCTTCAGAGCTATACAAGAACACCAAGGTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ACTTCTGGAAACTTCTTTGAGGTCCTTACTTCTTCAGAGCTATACAAGAACACCAAGGTT 718
Query 601 CGAGATATCTCTGGAACATTCCGCTGGGCACCGTTCCTGGCTCTGCAGAAAGAGAACTCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CGAGATATCTCTGGAACATTCCGCTGGGCACCGTTCCTGGCTCTGCAGAAAGAGAACTCC 778
Query 661 TTTTTGACCATGCTGTTACTTCTTTCTAAATACAAAATGAAGAGCATCCCGGTGGTTGAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TTTTTGACCATGCTGTTACTTCTTTCTAAATACAAAATGAAGAGCATCCCGGTGGTTGAT 838
Query 721 TTAGGTGTAGCAAAGATCGAGAACATTATCACACAATCAGGAGTTATACATATGCTGGCA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTAGGTGTAGCAAAGATCGAGAACATTATCACACAATCAGGAGTTATACATATGCTGGCA 898
Query 781 GAATGCGCGGGGCTTCTCTGGTTTGAGGATTGGGGAATTAAAACTCTCTCTGAAGTCGGT 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 899 GAATGCGCGGGGCTTCTCTGGTTTGAGGATTGGGGAATCAAAACTCTCTCTGAAGTCGGT 958
Query 841 CTTCCCATTATGTCAAAGGATCATATCATAAAGATCTATGAGGATGAACCAGTTCTTCAG 900
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 959 CTTCCCATTATGTCAAAGGACCATATCATAAAGATCTATGAGGATGAACCAGTTCTTCAG 1018
Query 901 GCATTCAAGCTGATGAGGAGAAAGAGAATCGGAGGCATACCTGTAATTGAAAGGAATAGC 960
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1019 GCATTCAAGCTGATGAGGAGAAAGAGAATCGGAGGCATACCTGTCATTGAAAGGAATAGC 1078
Query 961 GAGAAACCAGTAGGCAACATAAGCCTTAGAGATGTTCAATTTCTCCTCACTGCACCAGAG 1020
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1079 GAGAAGCCAGTAGGCAACATAAGCCTTAGAGATGTTCAATTTCTCCTCACTGCACCTGAG 1138
Query 1021 ATCTACCATGACTACAGGTCAATCACAACGAAGAACTTCTTAGTATCTGTTAGAGAGCAT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 ATCTACCATGACTACAGGTCAATCACAACGAAGAACTTCTTAGTATCTGTTAGAGAGCAT 1198
Query 1081 CTTGAGAAGTCCGGGGATACATCAGCTCCTATCATGAGCGGTGTGATTGCTTGCACGAAG 1140
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1199 CTTGAGAAGTGCGGGGATACATCAGCTCCTATCATGAGTGGTGTGATTGCTTGCACGAAG 1258
Query 1141 AACCATACACTAAAGGAACTGATCTTGATGCTAGACGCCGAGAAGATCCATAGGATATAT 1200
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 1259 AACCATACACTAAAGGAACTGATCTTGATGTTAGACGCGGAGAAGATCCATAGGATATAT 1318
Query 1201 GTGGTGGATGATTCTGGTAACCTTGAAGGACTCATCACCCTCAGAGACATCATCGCAAGA 1260
|| |||||||||| |||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 1319 GTTGTGGATGATTTTGGTAACCTTGAAGGACTCATCACTCTTAGAGACATCATTGCAAGA 1378
Query 1261 CTTGTCCATGAGCCATCTGGCTATTTTGGGGATTTCTTTGATGGCGTCATACCTCTTCCC 1320
||||||||||||||||| ||||||||||| |||||||||||||| || || |||||||||
Sbjct 1379 CTTGTCCATGAGCCATCCGGCTATTTTGGAGATTTCTTTGATGGTGTTATGCCTCTTCCC 1438
Query 1321 GAGAACTACCGAGTCTGAGA-AAA--TGGTGTCTTTCTTCTGTAAATTGTCTTTTGTTTG 1377
|| ||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||
Sbjct 1439 GAAAACTACCGAGTCTGAGAGAAAAATGGTATCTTTCTTCTGTAAATTGTCTTTTGTTTG 1498
Query 1378 GTAACAATGCTTCTGTCTGTTTGTGCTAAAGTTCTCGAATTTGTGTTATTAAAAGTT-AA 1436
|| | |||||||||||||||||||||| ||||||||||| |||||||||||| ||| ||
Sbjct 1499 GTGATAATGCTTCTGTCTGTTTGTGCTTAAGTTCTCGAAATTGTGTTATTAAC-GTTTAA 1557
Query 1437 CAGAAATAAGAAAAGAAGGAAG 1458
|||||||||||||||||| |||
Sbjct 1558 CAGAAATAAGAAAAGAAGAAAG 1579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71887180440
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5