BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg937617
Length=250
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48570.1 | Symbols: | secE/sec61-gamma protein transport pr... 398 2e-110
> AT3G48570.1 | Symbols: | secE/sec61-gamma protein transport
protein | chr3:18003913-18004974 REVERSE LENGTH=490
Length=490
Score = 398 bits (215), Expect = 2e-110
Identities = 242/254 (95%), Gaps = 6/254 (2%)
Strand=Plus/Plus
Query 1 CAATTCCGATCT---AAGAAGTCATGGAAGCCATTGATTCCGCAATCGATCCTCTCAGAG 57
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 40 CAATTCCGATCTAAAAAGAAGTCATGGAAGCCATTGATTCCGCAATCGATCCTCTCAGAG 99
Query 58 ATTTCGCTAAGAGCAGTGTTCGTCTCGTCCAGCGCTGTCACAAACCCGATCGCAAAGAAT 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 100 ATTTCGCTAAGAGCAGTGTTCGTCTCGTCCAGCGCTGTCACAAACCCGATCGCAAGGAAT 159
Query 118 TCACCAAAGTTGCTGTGCGTACGGCGATTGGATTTGTGGTGATGGGATTCGTTGGCTTCT 177
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 160 TCACGAAAGTAGCTGTGCGTACGGCGATTGGATTTGTGGTGATGGGATTCGTTGGATTCT 219
Query 178 TCGTGAAGCTCGTCTTCATCCCAATCAACAACATCATCGTTGGATCTGCTTAGTGTA--- 234
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 220 TCGTGAAGCTCGTTTTCATCCCAATCAACAACATCATCGTTGGATCTTCTTAGTGTAGTA 279
Query 235 CTTTCTTTACGAGG 248
||||||||||||||
Sbjct 280 CTTTCTTTACGAGG 293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11360511274
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5