BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg937625

Length=402
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G48675.1 | Symbols:  | Protein of unknown function (DUF1278)...   466    7e-131


> AT3G48675.1 | Symbols:  | Protein of unknown function (DUF1278) 
| chr3:18034192-18034551 FORWARD LENGTH=360
Length=360

 Score =  466 bits (252),  Expect = 7e-131
 Identities = 326/362 (90%), Gaps = 4/362 (1%)
 Strand=Plus/Plus

Query  23   ATGGAAAACAAATCAGGAGCTATTCTCTTTGTGATCTTAGCTATGGCCATTGTTCTTCAA  82
            ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1    ATGGAAAACAACTCAGGAGCTATTCTCTTTGTGATCTTAGCTATGACCATTGTTCTTCAA  60

Query  83   GTGAGGCCAGGGTTAGCTCAAATACTCCCT-CATATCCCTGAACTTTTCCCACCGGGTTC  141
            ||||||||||||||  |||||  ||||||| |  ||||| | |||||||||||||||| |
Sbjct  61   GTGAGGCCAGGGTTCTCTCAAGCACTCCCTACG-ATCCCCGGACTTTTCCCACCGGGT-C  118

Query  142  T-CCTATTGACATCGTAAAATGTTCGTCATCTCTCTTTGACGTCCAAGGATGTGTGCAAG  200
            | |||||||| ||| ||||||||| ||||||||||||| |||||||||||||||| ||||
Sbjct  119  TTCCTATTGATATCATAAAATGTTGGTCATCTCTCTTTAACGTCCAAGGATGTGTACAAG  178

Query  201  AAATCTACAATTCGATCTTTTCTGGTCAATTTGCAAACATTGAAGCCGCATGTTGTAAAA  260
            |||||||||| ||||| ||||||||||| ||||| | |||||||||| ||||||||||||
Sbjct  179  AAATCTACAAATCGATATTTTCTGGTCAGTTTGCTAGCATTGAAGCCCCATGTTGTAAAA  238

Query  261  TATTTTTAGCAATAGACACAAACTGTTGGCCTCGTATGTTTCCGTTGAACCCTTTCTTCC  320
              |||| ||| ||||| |||||||||||||| | ||||||||| |||||||| |||||||
Sbjct  239  CGTTTTCAGCTATAGATACAAACTGTTGGCCACATATGTTTCCATTGAACCCATTCTTCC  298

Query  321  CTCCTCTTCTCAAGAACAACTGCGAGCGCATTGCTACTACTCCATCATCAACACACAAGT  380
            ||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct  299  CTCCTATTCTCAAGAACAACTGCGAGCGTATTGCTACGACTCCATCATCAACACACAAGT  358

Query  381  GA  382
            ||
Sbjct  359  GA  360



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19001209122


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5